Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq72070 95.1 1e-14 >seq72070 Length=2916 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 95105 CCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCT 95164 |||||||||| || |||||||| || |||||||| |||||||||||||| |||| |||| Sbjct 1225 CCCCCATGCCAACAGCCTCCACTGCCCAGATCCTGGGCAACAACGAGTCCATCGAGCCCT 1284 Query 95165 TCACCTCCAACGTGTACAACAGGC-GGGTGCTCGCCGGGGAATTCC 95209 |||| |||| | ||| ||| || |||| ||| | ||||| |||| Sbjct 1285 ACACCAGCAACATCTAC-ACACGCAGGGTCCTCTCGGGGGAGTTCC 1329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493742380335800