Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq44322 181 2e-40 seq84412 125 1e-23 seq124118 100 4e-16 >seq44322 Length=22867 Score = 181 bits (200), Expect = 2e-40 Identities = 220/300 (73%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| ||||| || ||| || ||||| ||| | || || | Sbjct 1449 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 1390 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || |||||||| || || || | || |||||||||||||| ||||||||| | |||| Sbjct 1389 TGTTGACGATGTCGAAGCCAACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 1330 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| |||| |||| ||||| |||| ||| ||||| || |||| ||| | ||| Sbjct 1329 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGCGCACCCATCTCCACCATGG 1270 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 |||| ||||||||||| ||||| || || || || || | | ||| | ||| || || | Sbjct 1269 TCTCGCCGAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 1210 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || |||| ||| || || || | |||| ||| || || ||||| || || ||| ||| Sbjct 1209 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTGCAA 1150 Score = 138 bits (152), Expect = 2e-27 Identities = 175/239 (73%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 9453 GAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGAA 9512 ||| |||| || | |||| | |||||||| | | |||||| |||||||| | ||| Sbjct 694 GAAAGATTTGACCATATGGGAGAGTCCGTGCTCCAGCATGATGGAGTTGTTGTAGAGGAA 635 Query 9513 GTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCCA 9572 || | | | |||| | |||| ||| | || |||||||| ||| | ||||| Sbjct 634 CTGCTGGAAGGTGTACTCCTGGTCGTGGATGTGGAAGGTATCAGGCAGCAGTGGGTGCCA 575 Query 9573 GCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGGTACCG 9630 | |||| ||||| ||||||||||| || || ||||||||||||||||| ||| | Sbjct 574 GTGGTACAGGGTGTTGAACTCGGCTGCGATGCGGTTCTGGTACTGAAACCTCTGGT--TG 517 Query 9631 AACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATA 9689 ||||| | ||| |||||||| | |||| ||||||||||||||| || ||||| ||||| Sbjct 516 AACAGCAGCTCGGGGTCAAACTTCAGCTTGAAGTGGTACCCGCTCAGGTGCTGCACATA 458 >seq84412 Length=14514 Score = 125 bits (138), Expect = 1e-23 Identities = 207/299 (69%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| | |||| || |||||||||| || | ||| || | || ||| | Sbjct 6210 GGAACGCCACGTACGGGCACTTCTTCACATTGAGGCACACGAGCTTCTCCAGGGATGCCG 6151 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || || || || || || | | || || ||||| ||||||||||||||| | |||| Sbjct 6150 TCTTAACAATCTCAAAGCCAGCTGCTCCACCAAAGGTACTGGGTTTCCAGTACTCTGGGG 6091 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| ||| | | ||||| |||| |||||| ||||| || | ||| | || | Sbjct 6090 AGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATAC 6031 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || || || ||| || ||| | ||||| |||| | ||||| | ||| | || | Sbjct 6030 TTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGTAAGCCTGGGTAAAACTCCA 5971 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 ||| || | ||| ||||| || |||||| ||| || || |||| | ||| ||| || Sbjct 5970 GAGCATCAATGTCTCCATACAGCTCTTCCAGCTCTGCTGCCTTCTCTTCCTCTCCTGCA 5912 >seq124118 Length=2984 Score = 100 bits (110), Expect = 4e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 9794 AGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAAC 9853 |||| | |||||| || | |||||| || |||||||||||||| | |||||||| | | Sbjct 2984 AGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCCGGCACCAGGC 2925 Query 9854 CAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCA 9913 | ||||| || | |||||| | || |||| | |||||||| | ||||| ||||||| Sbjct 2924 CGAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCGGGCACGTGGGGCGGGTACAGCA 2865 Query 9914 TATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | | |||| || || || || || || |||||||| || || || | ||| Sbjct 2864 TCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCTCCATCGATCATCTG 2810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722293164007000