Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq44322 181 2e-40
seq84412 125 1e-23
seq124118 100 4e-16
>seq44322
Length=22867
Score = 181 bits (200), Expect = 2e-40
Identities = 220/300 (73%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
|||| || | || ||||| ||||| || ||| || ||||| ||| | || || |
Sbjct 1449 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 1390
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || |||||||| || || || | || |||||||||||||| ||||||||| | ||||
Sbjct 1389 TGTTGACGATGTCGAAGCCAACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 1330
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
|||||||| |||| |||| ||||| |||| ||| ||||| || |||| ||| | |||
Sbjct 1329 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGCGCACCCATCTCCACCATGG 1270
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
|||| ||||||||||| ||||| || || || || || | | ||| | ||| || || |
Sbjct 1269 TCTCGCCGAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 1210
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179
|| |||| ||| || || || | |||| ||| || || ||||| || || ||| |||
Sbjct 1209 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTGCAA 1150
Score = 138 bits (152), Expect = 2e-27
Identities = 175/239 (73%), Gaps = 4/239 (2%)
Strand=Plus/Minus
Query 9453 GAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGAA 9512
||| |||| || | |||| | |||||||| | | |||||| |||||||| | |||
Sbjct 694 GAAAGATTTGACCATATGGGAGAGTCCGTGCTCCAGCATGATGGAGTTGTTGTAGAGGAA 635
Query 9513 GTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCCA 9572
|| | | | |||| | |||| ||| | || |||||||| ||| | |||||
Sbjct 634 CTGCTGGAAGGTGTACTCCTGGTCGTGGATGTGGAAGGTATCAGGCAGCAGTGGGTGCCA 575
Query 9573 GCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGGTACCG 9630
| |||| ||||| ||||||||||| || || ||||||||||||||||| ||| |
Sbjct 574 GTGGTACAGGGTGTTGAACTCGGCTGCGATGCGGTTCTGGTACTGAAACCTCTGGT--TG 517
Query 9631 AACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATA 9689
||||| | ||| |||||||| | |||| ||||||||||||||| || ||||| |||||
Sbjct 516 AACAGCAGCTCGGGGTCAAACTTCAGCTTGAAGTGGTACCCGCTCAGGTGCTGCACATA 458
>seq84412
Length=14514
Score = 125 bits (138), Expect = 1e-23
Identities = 207/299 (69%), Gaps = 0/299 (0%)
Strand=Plus/Minus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
||||||| | |||| || |||||||||| || | ||| || | || ||| |
Sbjct 6210 GGAACGCCACGTACGGGCACTTCTTCACATTGAGGCACACGAGCTTCTCCAGGGATGCCG 6151
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || || || || || || | | || || ||||| ||||||||||||||| | ||||
Sbjct 6150 TCTTAACAATCTCAAAGCCAGCTGCTCCACCAAAGGTACTGGGTTTCCAGTACTCTGGGG 6091
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
|||||||| ||| | | ||||| |||| |||||| ||||| || | ||| | || |
Sbjct 6090 AGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATAC 6031
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
| || || || ||| || ||| | ||||| |||| | ||||| | ||| | || |
Sbjct 6030 TTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGTAAGCCTGGGTAAAACTCCA 5971
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178
||| || | ||| ||||| || |||||| ||| || || |||| | ||| ||| ||
Sbjct 5970 GAGCATCAATGTCTCCATACAGCTCTTCCAGCTCTGCTGCCTTCTCTTCCTCTCCTGCA 5912
>seq124118
Length=2984
Score = 100 bits (110), Expect = 4e-16
Identities = 127/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 9794 AGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAAC 9853
|||| | |||||| || | |||||| || |||||||||||||| | |||||||| | |
Sbjct 2984 AGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCCGGCACCAGGC 2925
Query 9854 CAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCA 9913
| ||||| || | |||||| | || |||| | |||||||| | ||||| |||||||
Sbjct 2924 CGAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCGGGCACGTGGGGCGGGTACAGCA 2865
Query 9914 TATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968
| | |||| || || || || || || |||||||| || || || | |||
Sbjct 2864 TCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCTCCATCGATCATCTG 2810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 722293164007000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |