Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq72070 98.7 1e-15 >seq72070 Length=2916 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/131 (77%), Gaps = 6/131 (5%) Strand=Plus/Minus Query 115876 AACTCACCCGCGAGGG---TGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCAC 115932 ||||| |||| |||| ||||| | ||||||||| | ||||| ||||| | | || Sbjct 1327 AACTCCCCCGAGAGGACCCTGCGTGTG---TAGATGTTGCTGGTGTAGGGCTCGATGGAC 1271 Query 115933 TCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTG 115992 || ||||| |||| ||| ||||| ||||||||||| |||||||| | ||||| |||||| Sbjct 1270 TCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCTGTTGGCATGGGGGAGATGAGGAGGCTG 1211 Query 115993 TTGCGGAGACC 116003 || | || ||| Sbjct 1210 TTCCTGACACC 1200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612290883631800