Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq145217 118 2e-21 >seq145217 Length=433 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | ||||||| | ||| |||| |||||| ||||| ||||| ||||| Sbjct 403 CCAGCCGTAGAAGTGCATGCTGGTCAGCTTGCCGTAGTTGGGCTCGGCGATGTGGATGTT 344 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTT 204036 ||| |||||||| ||||||||||| | | | | ||||| ||||| || | ||||| || Sbjct 343 CAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCTGCCATCTTCAGGATGGTTTT 284 Query 204037 CTGCGAAATCTCCCACACCGTCTTG 204061 ||| || ||||||||||| |||||| Sbjct 283 CTGGGAGATCTCCCACACAGTCTTG 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793578755118800