Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq69738 253 3e-62
seq25636 140 4e-28
>seq69738
Length=36730
Score = 253 bits (280), Expect = 3e-62
Identities = 1023/1598 (64%), Gaps = 34/1598 (2%)
Strand=Plus/Minus
Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627
|||||| || |||| ||||| || || ||||| ||||| || ||||| || ||
Sbjct 30843 TTCATCCTCTGCTTTGTACTTCTCTGCTTCTTGCACCATACGGTCGATGTCGTCCTTGCT 30784
Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687
| | ||||| || || || || || ||||| | ||||||| | ||| || |
Sbjct 30783 GAGGCGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCAC 30724
Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747
|| || || |||| |||||||| ||||| | || || | || | || || ||
Sbjct 30723 GGCGCTGACGTTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGAC 30664
Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807
||||| ||||| | || || || |||| ||||| | || || | |||||||| |
Sbjct 30663 TCCCCTGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAGGTTGTTATCCCT 30604
Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTGT 6865
| | | | |||||||| || || | | | ||| || || || |||
Sbjct 30603 TGTCATAGCCCTCTCACCTTCGTACACCTGGACGAGGACACTGCTC--TGGTTGTCTGAG 30546
Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925
|| | |||| | || || || | || || || || || | | || | |
Sbjct 30545 TAGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGGATGGTGGTGTTGCGCTTGATGAGAGCA 30486
Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985
||||| | || || || |||| || || |||||||| || || ||||| || | |
Sbjct 30485 GTCATCACCCCTCCAGCCGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGC 30426
Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045
|| || || || || | || ||| | | ||| || ||||| || | || |||
Sbjct 30425 AGATCCTGCACGTTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGTACGGCAGCGCCG 30366
Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105
|| || || |||||||||||||| || | || || || ||||| || || || |||||
Sbjct 30365 TAAGCCACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAATCC 30306
Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165
| || | || || || ||||| || || || ||||| |||| ||||| || |
Sbjct 30305 TGGAGCAGCTTCTGGATCTTGGGGATCCGGGTAGAGCCACCCACCAGCACGATCTCCTGG 30246
Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225
| | || |||| ||| | ||| || || | || || || || |||| |
Sbjct 30245 ATCTGGCCCTTGTCGAGCTTGGCGTCACGCAGAGCCTTCTCCACCGGCTCCAGGGTGCCA 30186
Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285
||||| | ||| | || ||||| ||||| ||||| |||||||| || ||||| |||
Sbjct 30185 CGGAAGAGGTCAGCATTGAGCTCCTCGAAACGGGCACGAGTAATGGAAGTGTAGAAGTCA 30126
Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT---AACGTT 7342
| ||| || | | || ||||| |||||| | | || ||| || || | ||
Sbjct 30125 ATGCCCTCAAAGAGAGAGTCAATCTCAATGCTAGCCTG---CGTGGAGGAGCTGAGGGTG 30069
Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402
||||| || | |||||| || || || | || | | || ||| ||| || | ||
Sbjct 30068 CGCTTGGCCCTCTCACAAGCTGTGCGCAGCCGCCTCACCGCTCGCTTGTTGCCAGCGATG 30009
Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462
|| ||| || || || || || ||||| ||||| | | | || ||
Sbjct 30008 TCACGCTTGTGCTTGCGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAAG 29949
Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522
|| || |||||||| || || || || || || | || || ||||| || || ||||
Sbjct 29948 TCCTCCCCACCCAAATGGGTGTCACCAGCTGTGGACTTTACCTCAAAAATCCCATCTTCG 29889
Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582
||| | | | || ||||| || || || || ||||||||||| ||||| || ||| |
Sbjct 29888 ATGGTAAGGATGGAGACATCGAAAGTGCCCCCTCCCAGGTCAAAGATGAGCACATTCTTC 29829
Query 7583 TCGTCGTC------TTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| || | | ||||| || || || || || ||||| || || || || |||
Sbjct 29828 TCTCCGGCCCGGGTTCCTTTCTTGTCCAGGCCATAAGCAATAGCGGCTGCAGTGGGCTCA 29769
Query 7637 TTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695
|| || ||||| | ||| || ||||||| ||||| | |||||||| || || || ||
Sbjct 29768 TTGATGATACGCATCACA-TTGAGGCCAGTGATAGTGCCGGCATCTTTGGTGGCCTGGCG 29710
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| || || || ||||| || || || || | ||| || | | || || || ||
Sbjct 29709 CTGGGAGTCATTGAAGTACGCTGGCACAGTGATGACAGCATTCTGCACCTTGCACCCTAG 29650
Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815
||| | || || || || ||||| ||||| || ||||| || ||||| || | |
Sbjct 29649 ATAGGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCTG-GGA 29591
Query 7816 AAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874
| | || ||| | || || || | || || | | | |||| || || ||||
Sbjct 29590 AGAAGGTCTTCATCTCCCCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CACCCT 29537
Query 7875 GGATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACT 7931
| ||| | | | ||||| ||||| || || ||| |||| | |||
Sbjct 29536 CATTCACCACACGGAAAGGCCAATGCTTCATGTCCGACTGCACCGTGGGGTCGTCATACT 29477
Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991
| | || || || ||||| ||||| || | ||||| |||||||||| ||| ||||
Sbjct 29476 TGCGGCCTATGAGGCGCTTGGCATCGAAGATGGTGTTGGTGGGGTTCATTGCTACCTGGT 29417
Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG- 8050
|||| || || |||||||| || || || || || || || || || || | ||||
Sbjct 29416 TCTTGGCAGCATCCCCGATGAGCCGCTCTGTA---TCAGTGAAGGCCACATA-GCTGGGT 29361
Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCG 8110
|| || || || || |||||||| || || || || || | | | || |||| ||
Sbjct 29360 GTGGTGCGGTTACCCTGGTCGTTGGCGATGATCTCCACCTTGCCATGCTGGAAGACACCC 29301
Query 8111 ACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148
||||| || ||||| || || | || || ||||| ||
Sbjct 29300 ACGCAGGAGTACGTGGTGCCCAGGTCGATGCCGATCGC 29263
>seq25636
Length=10948
Score = 140 bits (154), Expect = 4e-28
Identities = 355/540 (66%), Gaps = 0/540 (0%)
Strand=Plus/Plus
Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099
||||| || || || |||||||||||||| || | || || || ||||| ||||| ||
Sbjct 8041 GCCCCATACGCCACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCGTTGAAG 8100
Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159
| ||| | || | || || || ||||| || || || || || |||| |||||
Sbjct 8101 AAGTCCTGCAGCAGCTTCTGGATCTTGGGGATGCGCGTGGAGCCTCCCACCAGCACGATG 8160
Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219
|| | | | || || || | ||| | ||| | || | || || || || ||||
Sbjct 8161 TCGTGGATCTGAGACTTGTCCAGCTTGGCGTCCCTCAGCGCCTTCTCCACGGGGTCCAGG 8220
Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279
||||||| ||| || ||||| || || || | ||| ||||| || |||
Sbjct 8221 GTGCCGCGGAACAGGTCGGCGTTGAGCTCCTCGAAGCGAGCCCTGGTGATGGAGGTGTAG 8280
Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339
|| || | ||| ||||| | || || || || ||| | | || | | || || |
Sbjct 8281 AAGTCGATGCCCTCGTAGAGGGAGTCGATCTCGATGCTGGCCTGGGTGGAGGAGGACAGG 8340
Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399
|| ||||| |||||||| || || || || | || || | ||| ||| ||| ||
Sbjct 8341 GTGCGCTTGGCGCGCTCGCAGGCGGTGCGCAGGCGGCGCACGGCGCGCTTGTTCTCGCTG 8400
Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459
|| || ||||| || || || || ||||| | |||||| | | | |||
Sbjct 8401 ATGTCCTTCTTGTGCTTGCGCTTGAACTCGGCGATGAAGTGGTTCACCATGCGGTTGTCG 8460
Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519
|| || || || |||||||| || |||||||| || | ||| || || ||||| || ||
Sbjct 8461 AAGTCCTCCCCGCCCAAGTGGGTGTCCCCCGCCGTGGATTTCACCTCGAAGATGCCGTCT 8520
Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579
|| ||| | | | || || || || || || || |||||||| || ||||| ||||||
Sbjct 8521 TCGATGGTCAGGATGGACACGTCGAAGGTGCCGCCGCCCAGGTCGAAGATGAGCACGTTC 8580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633873609528200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |