Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq69738 253 3e-62 seq25636 140 4e-28 >seq69738 Length=36730 Score = 253 bits (280), Expect = 3e-62 Identities = 1023/1598 (64%), Gaps = 34/1598 (2%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| ||||| || || ||||| ||||| || ||||| || || Sbjct 30843 TTCATCCTCTGCTTTGTACTTCTCTGCTTCTTGCACCATACGGTCGATGTCGTCCTTGCT 30784 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| || || || || || ||||| | ||||||| | ||| || | Sbjct 30783 GAGGCGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCAC 30724 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || || || |||| |||||||| ||||| | || || | || | || || || Sbjct 30723 GGCGCTGACGTTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGAC 30664 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||||| ||||| | || || || |||| ||||| | || || | |||||||| | Sbjct 30663 TCCCCTGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAGGTTGTTATCCCT 30604 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTGT 6865 | | | | |||||||| || || | | | ||| || || || ||| Sbjct 30603 TGTCATAGCCCTCTCACCTTCGTACACCTGGACGAGGACACTGCTC--TGGTTGTCTGAG 30546 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 || | |||| | || || || | || || || || || | | || | | Sbjct 30545 TAGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGGATGGTGGTGTTGCGCTTGATGAGAGCA 30486 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | || || || |||| || || |||||||| || || ||||| || | | Sbjct 30485 GTCATCACCCCTCCAGCCGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGC 30426 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || || || || || | || ||| | | ||| || ||||| || | || ||| Sbjct 30425 AGATCCTGCACGTTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGTACGGCAGCGCCG 30366 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||||||||| || | || || || ||||| || || || ||||| Sbjct 30365 TAAGCCACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAATCC 30306 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | || | || || || ||||| || || || ||||| |||| ||||| || | Sbjct 30305 TGGAGCAGCTTCTGGATCTTGGGGATCCGGGTAGAGCCACCCACCAGCACGATCTCCTGG 30246 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 | | || |||| ||| | ||| || || | || || || || |||| | Sbjct 30245 ATCTGGCCCTTGTCGAGCTTGGCGTCACGCAGAGCCTTCTCCACCGGCTCCAGGGTGCCA 30186 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | ||| | || ||||| ||||| ||||| |||||||| || ||||| ||| Sbjct 30185 CGGAAGAGGTCAGCATTGAGCTCCTCGAAACGGGCACGAGTAATGGAAGTGTAGAAGTCA 30126 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT---AACGTT 7342 | ||| || | | || ||||| |||||| | | || ||| || || | || Sbjct 30125 ATGCCCTCAAAGAGAGAGTCAATCTCAATGCTAGCCTG---CGTGGAGGAGCTGAGGGTG 30069 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 ||||| || | |||||| || || || | || | | || ||| ||| || | || Sbjct 30068 CGCTTGGCCCTCTCACAAGCTGTGCGCAGCCGCCTCACCGCTCGCTTGTTGCCAGCGATG 30009 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462 || ||| || || || || || ||||| ||||| | | | || || Sbjct 30008 TCACGCTTGTGCTTGCGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAAG 29949 Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || || |||||||| || || || || || || | || || ||||| || || |||| Sbjct 29948 TCCTCCCCACCCAAATGGGTGTCACCAGCTGTGGACTTTACCTCAAAAATCCCATCTTCG 29889 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | | || ||||| || || || || ||||||||||| ||||| || ||| | Sbjct 29888 ATGGTAAGGATGGAGACATCGAAAGTGCCCCCTCCCAGGTCAAAGATGAGCACATTCTTC 29829 Query 7583 TCGTCGTC------TTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | | ||||| || || || || || ||||| || || || || ||| Sbjct 29828 TCTCCGGCCCGGGTTCCTTTCTTGTCCAGGCCATAAGCAATAGCGGCTGCAGTGGGCTCA 29769 Query 7637 TTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || ||||| | ||| || ||||||| ||||| | |||||||| || || || || Sbjct 29768 TTGATGATACGCATCACA-TTGAGGCCAGTGATAGTGCCGGCATCTTTGGTGGCCTGGCG 29710 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || || || ||||| || || || || | ||| || | | || || || || Sbjct 29709 CTGGGAGTCATTGAAGTACGCTGGCACAGTGATGACAGCATTCTGCACCTTGCACCCTAG 29650 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 ||| | || || || || ||||| ||||| || ||||| || ||||| || | | Sbjct 29649 ATAGGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCTG-GGA 29591 Query 7816 AAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874 | | || ||| | || || || | || || | | | |||| || || |||| Sbjct 29590 AGAAGGTCTTCATCTCCCCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CACCCT 29537 Query 7875 GGATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACT 7931 | ||| | | | ||||| ||||| || || ||| |||| | ||| Sbjct 29536 CATTCACCACACGGAAAGGCCAATGCTTCATGTCCGACTGCACCGTGGGGTCGTCATACT 29477 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 | | || || || ||||| ||||| || | ||||| |||||||||| ||| |||| Sbjct 29476 TGCGGCCTATGAGGCGCTTGGCATCGAAGATGGTGTTGGTGGGGTTCATTGCTACCTGGT 29417 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG- 8050 |||| || || |||||||| || || || || || || || || || || | |||| Sbjct 29416 TCTTGGCAGCATCCCCGATGAGCCGCTCTGTA---TCAGTGAAGGCCACATA-GCTGGGT 29361 Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCG 8110 || || || || || |||||||| || || || || || | | | || |||| || Sbjct 29360 GTGGTGCGGTTACCCTGGTCGTTGGCGATGATCTCCACCTTGCCATGCTGGAAGACACCC 29301 Query 8111 ACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||||| || ||||| || || | || || ||||| || Sbjct 29300 ACGCAGGAGTACGTGGTGCCCAGGTCGATGCCGATCGC 29263 >seq25636 Length=10948 Score = 140 bits (154), Expect = 4e-28 Identities = 355/540 (66%), Gaps = 0/540 (0%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 ||||| || || || |||||||||||||| || | || || || ||||| ||||| || Sbjct 8041 GCCCCATACGCCACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCGTTGAAG 8100 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || | || || || ||||| || || || || || |||| ||||| Sbjct 8101 AAGTCCTGCAGCAGCTTCTGGATCTTGGGGATGCGCGTGGAGCCTCCCACCAGCACGATG 8160 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | || || || | ||| | ||| | || | || || || || |||| Sbjct 8161 TCGTGGATCTGAGACTTGTCCAGCTTGGCGTCCCTCAGCGCCTTCTCCACGGGGTCCAGG 8220 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||| ||| || ||||| || || || | ||| ||||| || ||| Sbjct 8221 GTGCCGCGGAACAGGTCGGCGTTGAGCTCCTCGAAGCGAGCCCTGGTGATGGAGGTGTAG 8280 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || | ||| ||||| | || || || || ||| | | || | | || || | Sbjct 8281 AAGTCGATGCCCTCGTAGAGGGAGTCGATCTCGATGCTGGCCTGGGTGGAGGAGGACAGG 8340 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| |||||||| || || || || | || || | ||| ||| ||| || Sbjct 8341 GTGCGCTTGGCGCGCTCGCAGGCGGTGCGCAGGCGGCGCACGGCGCGCTTGTTCTCGCTG 8400 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| || || || || ||||| | |||||| | | | ||| Sbjct 8401 ATGTCCTTCTTGTGCTTGCGCTTGAACTCGGCGATGAAGTGGTTCACCATGCGGTTGTCG 8460 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || || |||||||| || |||||||| || | ||| || || ||||| || || Sbjct 8461 AAGTCCTCCCCGCCCAAGTGGGTGTCCCCCGCCGTGGATTTCACCTCGAAGATGCCGTCT 8520 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 || ||| | | | || || || || || || || |||||||| || ||||| |||||| Sbjct 8521 TCGATGGTCAGGATGGACACGTCGAAGGTGCCGCCGCCCAGGTCGAAGATGAGCACGTTC 8580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633873609528200