Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq65683 129 1e-24
>seq65683
Length=849
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| |||||||| ||||| || || ||||| |||| || || | || ||||| |||||
Sbjct 112 GTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTACGACCGTCTTCCAGCTG 171
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || ||||| || || | || || || ||||| |||||||| |||||||| || ||
Sbjct 172 CTTGCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTT 231
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || ||||||||||| ||||| || ||||| | ||||| || ||
Sbjct 232 GGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGT 291
Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142
|| || || ||||| | |||||||
Sbjct 292 CAGGGTCTTGACGAAGATCTGCATTT 317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1107226992970035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |