Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq65683 129 1e-24 >seq65683 Length=849 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||| ||||| || || ||||| |||| || || | || ||||| ||||| Sbjct 112 GTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTACGACCGTCTTCCAGCTG 171 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || || | || || || ||||| |||||||| |||||||| || || Sbjct 172 CTTGCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTT 231 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || ||||||||||| ||||| || ||||| | ||||| || || Sbjct 232 GGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGT 291 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 || || || ||||| | ||||||| Sbjct 292 CAGGGTCTTGACGAAGATCTGCATTT 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107226992970035