Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq65683 104 2e-17
>seq65683
Length=849
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| ||||||||| ||||| ||||| || ||| | || | || |||
Sbjct 107 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTACGACCGTCTTCC 166
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || || || || || | ||||| || | || | || ||||||||
Sbjct 167 AGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGG 226
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| ||||| | | || | || | || ||| || |||| ||| ||||| ||
Sbjct 227 ATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTG 286
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
||||| || ||||| || ||||||||||| ||
Sbjct 287 CCCGTCAGGGTCTTGACGAAGATCTGCATTTT 318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324006083758440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |