Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq36611 120 3e-22 seq17341 111 2e-19 >seq36611 Length=16847 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||||||||| || | |||||||| | ||||||||| | Sbjct 2969 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 2910 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| || |||||||| | Sbjct 2909 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAGG 2850 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 2849 CTACTACGCGTTCTCC 2834 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 19244 TCAATAA----ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299 ||||||| |||||||||||||||||| |||||||| || || ||||| || || || Sbjct 1282 TCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTGGAAGCCATAG 1223 Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| | |||||||| || |||||||| Sbjct 1222 AAACAACGAGCTTCTGTGATTTGTACTTC 1194 >seq17341 Length=11243 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || || ||||||||||| || || || | Sbjct 768 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 827 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 828 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 887 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 888 CAACCACTCTCTCACC 903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560994384172200