Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq25636 96.9 3e-14 >seq25636 Length=10948 Score = 96.9 bits (106), Expect = 3e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||||||| | ||||| ||||| ||||| |||||||| || || || || || Sbjct 8833 GTTACCAATGCAGTAGTGACTGTCCCAGCCTATTTCAATGACTCCCAGCGCCAGGCAACA 8774 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||| || || || || || || | || ||||| || || || || Sbjct 8773 AAAGATGCTGGAACTATCGCAGGGCTCAACGTCCTGAGAATCATCAACGAGCCCACAGCA 8714 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| || || || || || Sbjct 8713 GCTGCCATTGCCTACGGGCTGGACAA 8688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4020908252291450