Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq36611 134 2e-26
>seq36611
Length=16847
Score = 134 bits (148), Expect = 2e-26
Identities = 103/122 (84%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
||||||||||| || | |||||||||||| || | ||| |||||||| |||||||| ||
Sbjct 2967 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 2908
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| |||||| |||| ||||||||| ||||||||||| || ||||| || |||||||| |||
Sbjct 2907 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAGGCT 2848
Query 37320 AC 37321
||
Sbjct 2847 AC 2846
Score = 82.4 bits (90), Expect = 9e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931
||| |||||||| | |||||||| || ||||| | || || ||||||||||| |||||
Sbjct 4180 CATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTTGTCTTGCCTTC 4121
Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964
|| || || |||||||| || ||||| |||||
Sbjct 4120 CAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 4088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591142494924200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |