Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq33192 136 7e-27
seq108171 125 1e-23
seq6642 118 2e-21
seq109629 111 3e-19
seq72070 102 2e-16
seq145217 93.3 8e-14
seq17202 84.2 4e-11
>seq33192
Length=1908
Score = 136 bits (150), Expect = 7e-27
Identities = 128/163 (79%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1549 GTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 1608
Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647
|| ||| |||| || |||||||||||||||||||||| || ||||| ||||
Sbjct 1609 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGG 1668
Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690
||| | | || | |||||| | | |||||| |||||||
Sbjct 1669 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 1711
>seq108171
Length=529
Score = 125 bits (138), Expect = 1e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200
|| ||||| || || ||||||||| | | ||||||||| |||||| ||||||||||
Sbjct 279 CCCTTGCTGACCGGAGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCA 220
Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260
||| |||| |||||| ||||||| ||||| ||||| || | | ||||||| || |
Sbjct 219 CAGCTGGCCTCCAGGGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGCAGCTGG 160
Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320
|||| | | | |||||| | | |||| | ||| | || ||||| ||||| ||
Sbjct 159 GCCTGGGCGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACG 100
Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352
|||||||||||||| | ||| | | |||| ||
Sbjct 99 CCGATGCCGATGGGGCGGTGCCGCCGGTTGGA 68
>seq6642
Length=278
Score = 118 bits (130), Expect = 2e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 241430 AGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGAC 241489
|| |||| |||||| | || || | | ||||| || ||| | ||||| | |
Sbjct 54 AGCTGGGTGACCTGGGCGCGGAGGAGGTTGGCGGTGGCGGCCAGCTCGGCGTTCTGCCCC 113
Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549
|||||| ||||||| |||||||||||||| |||||||| ||||| || |||||||||||
Sbjct 114 TTGAGCGCCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCGCCGGCGGCAC 173
Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCC 241609
|| | ||| || | |||||| || || | ||| || || ||||| | || |||||| |
Sbjct 174 TTAGAGGCGGCGATGCGGTTTCGCAGCCGCTTGCGCTCTGCCTTCAGCCGCTCCTGGCTC 233
Query 241610 TCCATGTCGATCGGAGAC 241627
||| ||| | ||| |||
Sbjct 234 TCCGCGTCTAGCGGCGAC 251
>seq109629
Length=3266
Score = 111 bits (122), Expect = 3e-19
Identities = 115/151 (76%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872
||||||| |||||| || || |||| ||| || || |||||||||||||| | | |
Sbjct 958 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTGC 1017
Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932
|| ||| || | ||| || ||| || || || |||||||||||| ||||||||||
Sbjct 1018 TCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 1077
Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963
|||| |||||||||||| || || || ||||
Sbjct 1078 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 1108
>seq72070
Length=2916
Score = 102 bits (112), Expect = 2e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977
|||||| || || ||||| ||||| | ||| | ||| |||||||||||||||
Sbjct 1331 CTGGAACTCCCCCGAGAGGACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 1272
Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037
||||||||| ||||| ||||| |||||| |||||| |||||||| | | ||||| ||
Sbjct 1271 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCTGTTGGCATGGGGGAGATGAGGAGGCT 1212
Query 213038 GTTCCTCACTCCGT 213051
|||||| || ||||
Sbjct 1211 GTTCCTGACACCGT 1198
>seq145217
Length=433
Score = 93.3 bits (102), Expect = 8e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755
|||||||||||| |||||||| ||||| | | ||||| || ||||| | | |||
Sbjct 346 GTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCTGCCATCTTCAGGATGGT 287
Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815
| ||||||||| ||||||||| |||||| ||| | || ||||| || |||| | ||
Sbjct 286 TTTCTGGGAGATCTCCCACACAGTCTTGTAGAGCTGCTTCAGGTCATCGGGGATCTCAGG 227
Query 212816 GATGTTCTG 212824
|||||||||
Sbjct 226 GATGTTCTG 218
>seq17202
Length=1107
Score = 84.2 bits (92), Expect = 4e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 38967 TCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTACTC 39026
||||| | |||||| |||||||||||||| | | |||||| ||||| | | ||| |||
Sbjct 926 TCCCAGCGGTTGGCAGAGAAGAGCAGGTGAATGGTGTGGTCTTCCAGGTTCTTCTCCCTC 867
Query 39027 TCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTC 39070
||||||| |||||||||| || || || |||||||||||
Sbjct 866 CCCAGGTAGGAGCTGATCAGCTGCCCAATCTCTGTGGTTCTGTC 823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 929685978003200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |