Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq109629 107 4e-18 seq33192 100 5e-16 >seq109629 Length=3266 Score = 107 bits (118), Expect = 4e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || |||| ||||||||| || |||||||| || || || || || Sbjct 945 CTGGTTGGTTTCCACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTC 1004 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 |||| |||||||| ||| || |||| ||| |||| |||| |||||||| ||||| Sbjct 1005 CCTGGCTCGCTGCTCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTC 1064 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||||||||||||| |||| ||| | ||| || |||| || Sbjct 1065 CAAGTGCCACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 1108 >seq33192 Length=1908 Score = 100 bits (110), Expect = 5e-16 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 221723 CACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCAC 221782 ||||| ||||||| |||||| |||| |||| | |||||| || || |||||||||||| Sbjct 1527 CACAC--CCACCTCCTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCAC 1584 Query 221783 TTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATA 221842 |||||||| ||||||| | || || ||| | ||| | ||||||||||||||| Sbjct 1585 TTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATG 1644 Query 221843 AAGGGACCGCCAGTCTC 221859 |||| ||||||||| Sbjct 1645 TAGGGGGTGCCAGTCTC 1661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927003307131200