Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq65683 89.7 3e-12 >seq65683 Length=849 Score = 89.7 bits (98), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||| ||||| ||||| || | || ||||||||||| || ||||||||| Sbjct 161 TCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTG 220 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||| ||||| |||||| |||||| || || || | || ||||| || Sbjct 221 TCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATG 280 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| || || Sbjct 281 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTG 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3261375861998540