Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq77623 237 2e-57 seq9546 134 2e-26 >seq77623 Length=24705 Score = 237 bits (262), Expect = 2e-57 Identities = 660/1004 (66%), Gaps = 10/1004 (1%) Strand=Plus/Plus Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091 |||| ||| | | |||| |||| || || |||| |||| || || || ||| || Sbjct 16118 AGATACAGAGCTTTGTGCCGCAAATACTCTTCCAAGCATTTCACTGCAAAAGGGTCCACA 16177 Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151 || || || ||||| || || || ||||| ||| |||| ||||||| || |||| Sbjct 16178 TCAGTATCAAACTTATTAGCAAATAGGTGGTG---GTTTCGTAGCATCCAGTTCAAGTCT 16234 Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211 || || || || ||||| || || ||||| || || |||| || ||||| | || Sbjct 16235 CCTACTCCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGCGCA 16294 Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 ||||| | |||||||||||| ||||||||||||| ||||||||||| | || | |||| Sbjct 16295 CCTTTGGACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATG 16354 Query 160272 TCGGAGGTGTCGTATTTGTACATCAGG--GGAACGGCACCGGGAACGCCGGGCATACGCT 160329 || || |||||| |||| || | || | || ||||| || || | || || | || Sbjct 16355 TCAGAAACGTCGTACTTGT-CA-CTGGAAGAAAATGCACCTGGGACTTCAGGGATTCTCT 16412 Query 160330 GTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 | | || |||||||||| || || |||||||| || || || | ||| || ||||||| Sbjct 16413 GAATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAACT 16472 Query 160390 CTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACG 160449 ||| |||| || || | || || |||| | || ||||| || | Sbjct 16473 TAAGTATTTTGCTGTTTTCTAGTACATATCCTACAAAGCTTCTGCTAACTACAAAATAGG 16532 Query 160450 CGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAG 160509 | ||||| || || | ||| || | || || | |||||| || ||||| Sbjct 16533 CACTGCCAGAAAAAACCGGAGTGCTCAGGGGTGGAAGTTGTTTGTCTATGCCTGTGTTCT 16592 Query 160510 ACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCA 160569 | || | | | | | || | ||||||||||| || || | |||| Sbjct 16593 TTATTTTACCATCAATAATCTCATGGTGTTTCTTCCACCTTACTTCTTTATAAATAGGCA 16652 Query 160570 TGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTA 160629 | ||| || || | ||||| |||| | || | ||| | | || || || || Sbjct 16653 TTTTTTCTGTTTCCAAGCTGTTTTCACCCTTAAGAGCTTTTAATTTCTCCACTATTTCCT 16712 Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC 160689 |||| ||||| | |||||||| |||| || | |||||| | || ||||| || | | Sbjct 16713 GGTTGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGATATTTCCAGTTTGAAC 16772 Query 160690 TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749 | || || || ||||||| ||||| ||||||||||| | |||||| ||||| | Sbjct 16773 TTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCAT 16832 Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809 | || || |||||| | |||| | |||||| ||||| ||||| || || |||||| Sbjct 16833 ATACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCT 16892 Query 160810 CCACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTC 160868 ||| | ||| || || || | | |||| ||| || || | ||| || | ||| Sbjct 16893 TCACAG-CAGCAAAAAAGGATTCTGGAGACTTTTTGTCTACATGGATGCAGTAAAAATTC 16951 Query 160869 TGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACG 160928 || || ||||| || | || || | || || | |||||| || || |||| | ||| Sbjct 16952 TGTGGAGCGTATATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACT 17011 Query 160929 ATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTT 160988 || ||||| || || ||||| || | || || ||| || | | | | ||| || Sbjct 17012 ATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTACTGAGAGGTTCCATAATGTATTTC 17071 Query 160989 CGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 | |||||| | || | |||| || |||||||| ||||| Sbjct 17072 CTAGTCTTGGTGAAGGAGGCACAGTCTGCAGTCATGTTAATATA 17115 >seq9546 Length=11392 Score = 134 bits (148), Expect = 2e-26 Identities = 237/345 (69%), Gaps = 3/345 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| ||||| | || || ||||| |||||||| |||| || || |||||| | Sbjct 1027 TGTGGCGCAGGTACTCCTCGAGACACTGGACGGCCGCATCGTCCACCTCGGGGTCGAACT 968 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || |||||||| | ||| || |||||| ||||||| || |||| | | Sbjct 967 TGTTGGCCAAGAGATGGTGC---TGCTGCAGCATCCAGGGCACGTCGCCCACCCCGTAGA 911 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 |||||||| || ||| |||| ||||||||||||| || || || | || Sbjct 910 TGCAGACGGCGCGCTGGTGGCGGCCGGTGCAAGGCGGGTAGGACGCGCCCTTGCTGATGT 851 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || | |||||||||| || | | || | || | |||||| ||| | || Sbjct 850 CCCCCTCCATGAACTGCCACTTGACTAGGCGGGGAAGGGCGTTCATGTCCGAGAGCTGGT 791 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| | | ||| | | || || || || ||||| || | ||||||||||| | Sbjct 790 ACTTGTCGCTGAAGGGCGTGCCCCCCGGCACACCCGGCATGCGGTTCAGGGTGGCCCAGA 731 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 ||| ||||| |||||||| ||||||| ||||| || | ||||| Sbjct 730 CGTGCTCGTCAGGGCTGTAGCTGTCCTTGGACCACTCGAGGAACT 686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576074826859800