Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq424 84.2 3e-11 >seq424 Length=83501 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 48074 CACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCT 48133 |||| ||||| || | ||| || ||||| |||||||| | ||||| | |||||||| | Sbjct 28094 CACCGTAAGGCGATCTTGGGTAAAAAGGAGTGGTCTCCTTTTGTGGGATTTCTTGCACTT 28035 Query 48134 TACCATAAAGTTCACTGGTGGATGCTTGATA 48164 | ||| |||||||||||||||| ||||| || Sbjct 28034 TTCCAAAAAGTTCACTGGTGGAGGCTTGGTA 28004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664175015758600