Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq69738 329 4e-85 seq65683 161 1e-34 seq25636 107 3e-18 seq102638 93.3 6e-14 seq126374 87.8 2e-12 >seq69738 Length=36730 Score = 329 bits (364), Expect = 4e-85 Identities = 1046/1599 (65%), Gaps = 41/1599 (3%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| | || || || ||||| || || ||||| | || ||| Sbjct 29263 GCGATCGGCATCGACCTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAG 29322 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | || ||||| || ||||| || || || || || ||||| || Sbjct 29323 GTGGAGATCATCGCCAACGACCAGGGTAACCGCACCACACCCAGCTATGTGGCCTTCACT 29382 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || ||||| || || || ||| ||| |||||||| | ||| Sbjct 29383 GATACAGAGCGGCTCATCGGGGATGCTGCCAAGAACCAGGTAGCAATGAACCCCACCAAC 29442 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || |||| || || ||||| || || || ||||||| | || | || || Sbjct 29443 ACCATCTTCGATGCCAAGCGCCTCATAGGCCGCAAGTATGACGACCCCACGGTGCAGTCG 29502 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| | ||| ||| || || || || || ||||| | | | | Sbjct 29503 GACATGAAGCATTGGCCTTTCCGTGTGGTGAA---TGAGGGTGGCAAGCCCAAGGTGCAG 29559 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTT 195657 || || | | || |||| ||| | || |||| || || || || |||||| | Sbjct 29560 GTGGAGTACAAGGGGGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTGCT 29618 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTT-TCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | ||||||||||||| ||| || | | || |||| || ||| | |||| || Sbjct 29619 CACCAAGATGAAGGAGATTGCTGAGGCCTATCTAGGGTGCAAG-GTGCAGAATGCTGTCA 29677 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | ||||| || || ||||||| ||| || || || ||||| || || || || | ||| Sbjct 29678 TCACTGTGCCAGCGTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCCGGCACTA 29737 Query 195777 TTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 | | || || || ||| | | || |||||||| || || || || || ||||||||| Sbjct 29738 TCACTGGCCTCAA-TGTGATGCGTATCATCAATGAGCCCACTGCAGCCGCTATTGCTTAT 29796 Query 195836 GGTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGT 195889 || ||||||||||| | || || ||| || ||||| | |||||||| || || Sbjct 29797 GGCCTGGACAAGAAAGGAACCCGGGCCGGAGAGAAGAATGTGCTCATCTTTGACCTGGGA 29856 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCT 195949 || || || || |||||||| | || | || |||| ||| || || || |||||| | Sbjct 29857 GGGGGCACTTTCGATGTCTCCATCCTTACCATCGAAGATGGGATTTTTGAGGTAAAGTCC 29916 Query 195950 ACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTT 196008 || |||||||| || ||| | ||||| || || || || || | | || ||| Sbjct 29917 ACAGCTGGTGACACCCATTTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCACTTT 29976 Query 196009 GTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCG 196068 || || || ||| || ||| | ||| || || |||| || | || | | Sbjct 29977 GT-GGAAGAATTCAAGCGCAAGCACAAGCGTGACATCGCTGGCAACAAGCGAGCGGTGAG 30035 Query 196069 TCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCT---CTCTTCTACGGCTCAAAC 196125 ||||| | || || ||||| | ||||| || || || ||| || ||| || | Sbjct 30036 GCGGCTGCGCACAGCTTGTGAGAGGGCCAAGCGCACCCTCAGCTCCTCCACG---CAGGC 30092 Query 196126 AATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGC 196185 | |||||||||| || | ||||| || ||||||||||| || | ||||| ||||| Sbjct 30093 TAGCATTGAGATTGACTCTCTCTTTGAGGGCATTGACTTCTACACTTCCATTACTCGTGC 30152 Query 196186 ACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGT 196245 ||||| || ||| | || |||| | || | |||| || || || | | Sbjct 30153 CCGTTTCGAGGAGCTCAATGCTGACCTCTTCCGTGGCACCCTGGAGCCGGTGGAGAAGGC 30212 Query 196246 ACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATC 196305 || |||||||| ||| | || ||| || | | || || || || ||||| || || Sbjct 30213 TCTGCGTGACGCCAAGCTCGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGTGGCTC 30272 Query 196306 AACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG--CTTCTTCAATAATAAAGATTTA 196363 ||||| || || ||||| || || ||| || || ||||||||| ||||| | Sbjct 30273 TACCCGGATCCCCAAGATCCAGAAGCTGC--TCCAGGATTTCTTCAATGGCAAAGAGCTC 30330 Query 196364 AACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATT 196423 ||||| | |||||||| ||||| || || ||||| || || ||||| || || ||||| Sbjct 30331 AACAAGAGCATCAACCCCGATGAGGCTGTGGCTTACGGCGCTGCCGTACAAGCAGCTAT- 30389 Query 196424 CTCTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCC 196480 |||| | | ||||| | | ||||| || ||||| ||||| | ||||| | || Sbjct 30390 -CCTCATG-GGAGACAAGTCTGAGAACGTGCAGGATCTGCTGCTGTTGGATGTCACCCCT 30447 Query 196481 GTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACA 196540 | |||||||| | || || || || || || |||||| | || | | ||||| Sbjct 30448 CTGTCCCTGGGCATCGAGACGGCTGGAGGGGTGATGACTGCTCTCATCAAGCGCAACACC 30507 Query 196541 ACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGT 196599 || || || || || | || ||| | || || || || || || | || |||| Sbjct 30508 ACCATCCCCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GTGT 30566 Query 196600 TCATATTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGG 196656 | | || || || |||| |||| ||| || ||| ||||||| | || || || Sbjct 30567 CCTCGTCCAGGTGTACGAAGGTGAGAGGGCT---ATGACAAGGGATAACAACCTGCTGGG 30623 Query 196657 AACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTG 196716 | || || | || || || || | |||||||| || || || ||||| | || Sbjct 30624 CAAGTTTGACCTAACAGGCATCCCCCCAGCACCCAGGGGAGTCCCCCAGATCGAGGTCAC 30683 Query 196717 CTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAA 196776 || || || || || ||||| || || ||||||| || | ||||||| | || || Sbjct 30684 TTTTGACATCGATGCCAATGGTATCCTGAACGTCAGCGCCGTGGACAAGAGCACGGGTAA 30743 Query 196777 ATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACG 196836 | ||||| || ||||| |||||||| || || ||||| || || || || Sbjct 30744 GGAGAACAAGATCACCATCACCAACGACAAGGGTCGCCTCAGCAAGGACGACATCGACCG 30803 Query 196837 TATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 |||||| ||||| || || ||||||| | ||| || || Sbjct 30804 TATGGTGCAAGAAGCAGAGAAGTACAAAGCAGAGGATGA 30842 >seq65683 Length=849 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||||||||| ||| | Sbjct 315 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCCAGC 256 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| ||||| ||||||||||| || || |||||| Sbjct 255 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGATCAG 196 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || ||||| ||||| || ||||| ||||| || |||||||| | || |||||| Sbjct 195 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGACGGTCGTACCCTGTCCGACTACAAC 136 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || || ||||| ||| | || || | || || ||||| Sbjct 135 ATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCGCCTGCGAGGTGG 89 >seq25636 Length=10948 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 ||||||| |||||||| || || || |||| ||| || || || ||||| ||||| || | Sbjct 8826 ATGCAGTAGTGACTGTCCCAGCCTATTTCAATGACTCCCAGCGCCAGGCAACAAAAGATG 8767 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| |||| || || || ||| || ||||| ||||| || || ||||| ||||| | Sbjct 8766 CTGGAACTATCGCAGGGCTCAACGTCCTGAGAATCATCAACGAGCCCACAGCAGCTGCCA 8707 Query 195828 TTGCTTATGGTCTGGACAAGAA 195849 |||| || || ||||||||||| Sbjct 8706 TTGCCTACGGGCTGGACAAGAA 8685 >seq102638 Length=1501 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || ||||| |||||||| ||||| ||| | Sbjct 1169 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTGGAGCCCAAT 1110 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| | ||||||||||| || || |||||||| Sbjct 1109 GACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGG 1066 >seq126374 Length=5619 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 |||||| ||||| |||||||| || |||||||||| ||| ||| || || | | Sbjct 1107 AACAGCTGCTGCCATTGCTTACGGACTGGACAAGAGAGAGGG---AGAGAAGAACATCCT 1163 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | || || || || ||||| || |||||||| || || |||| ||||| || | Sbjct 1164 CGTATTCGACCTGGGCGGTGGAACCTTTGATGTGTCCCTCCTCACAATTGACAACGGAGT 1223 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| ||||||| |||||||||||| | ||||| ||||| || || Sbjct 1224 CTTTGAAGTTGTGGCTACTAATGGTGATACTCACTTGGGTGGAGAAGACTTTGA 1277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656558146675600