Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq123596 143 3e-28
seq33192 120 4e-21
seq109629 100 3e-15
seq87257 100 3e-15
seq36611 98.7 1e-14
seq96250 89.7 6e-12
seq53310 87.8 2e-11
>seq123596
Length=5871
Score = 143 bits (158), Expect = 3e-28
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 1432 GCTTGGCCAGCTCTCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 1373
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||| ||||| ||| |||||| | ||||| || | |
Sbjct 1372 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCCTCCCCAGCAATGCGCTCAAAGA 1313
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||| || |
Sbjct 1312 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGAT 1253
Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546
| |||||||| |||||||||||||
Sbjct 1252 GGACCTGCTTCAGCACCTTGTAGA 1229
>seq33192
Length=1908
Score = 120 bits (132), Expect = 4e-21
Identities = 128/169 (76%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226
||||||||||||||||||||| || | | || |||||||||||||||||| | ||
Sbjct 1558 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 1617
Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286
|||| || |||||||| |||||||||||| | ||| ||||| |||| | | ||| |
Sbjct 1618 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGGACTCGATG 1677
Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335
||||| |||||| ||| | || ||| || | ||| |||||||||
Sbjct 1678 ATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACGCGGCCCT 1726
>seq109629
Length=3266
Score = 100 bits (110), Expect = 3e-15
Identities = 84/103 (82%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234
|||| | ||||||||| ||||| |||||||||||||| || ||||| || || |||||||
Sbjct 2026 CGGCCAGGCCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 2085
Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277
||||||| ||||| |||| |||||||| || || |||||
Sbjct 2086 AGATGCCTTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 2128
>seq87257
Length=542
Score = 100 bits (110), Expect = 3e-15
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095
||||||||||||||||| ||| ||||| ||| | |||||||| | |||| |
Sbjct 306 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGCCTCACGCCCACCGAGTTC 365
Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155
|| | ||| || ||||| |||||||||||| |||||||||||||||| |||||||||
Sbjct 366 TTCTTCCACGCCATGGGCGGCCGCGAGGGCCTCATCGACACGGCCGTCAAAACGGCCGAG 425
Query 509156 ACGGG 509160
|| ||
Sbjct 426 ACCGG 430
>seq36611
Length=16847
Score = 98.7 bits (108), Expect = 1e-14
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889
||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | ||
Sbjct 445 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 386
Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943
||| |||| ||||||| ||| || ||| |||||| || |||| ||| || ||
Sbjct 385 GTACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 332
>seq96250
Length=4551
Score = 89.7 bits (98), Expect = 6e-12
Identities = 117/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 1852372 CTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAG 1852431
|||||| || ||||| || ||||| ||| | |||| ||||| |||||| || ||
Sbjct 498 CTGGTAATCAGTGCCCCGGACAAATCTGAGCTTGTCCAGGGGCACCCCGATGCTCTCCAG 439
Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491
|||||| |||||| | |||||| ||||| || | || | ||| ||||| || |
Sbjct 438 CATGGCTTTGATGACGTGCTCGTAGTAGCGGGTGCGCAGCTCCAGCAGCTCCCAGGGAGC 379
Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGAT 1852533
|| |||||| |||| ||||| | |||||||||||||||
Sbjct 378 TTTCATGTTGTCCAGGTAAGCGTGGAGGTCGGCAAAGAGGAT 337
>seq53310
Length=26634
Score = 87.8 bits (96), Expect = 2e-11
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | || || | || ||||| | |||||| || ||
Sbjct 2500 GCTTGGCCAGCTCCCCGGGCAGCAGGAGCCGGGCAGCCGTCTGCACCTCGCGGCTGGTGA 2441
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| || | | | |||||||| ||| ||||| | | | | ||| || | ||
Sbjct 2440 TGGTGGCACGGCCGCTGTACTGCGCCAGGCGGGACGCCTCTGAGGCCAGGCGCTCAAACA 2381
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||| |||||||| |||||||||| ||| | |||| |||||| ||| ||| ||||
Sbjct 2380 TGTCATTGACAAAAGAGTTCATGATGCTCATGGCCTTGGAGGAGATAGCCAGGTCTGGGT 2321
Query 1254523 GCACCTGC 1254530
||||||||
Sbjct 2320 GCACCTGC 2313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6094123330952785
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |