Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq123596 143 3e-28 seq33192 120 4e-21 seq109629 100 3e-15 seq87257 100 3e-15 seq36611 98.7 1e-14 seq96250 89.7 6e-12 seq53310 87.8 2e-11 >seq123596 Length=5871 Score = 143 bits (158), Expect = 3e-28 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 1432 GCTTGGCCAGCTCTCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 1373 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||| | ||||| || | | Sbjct 1372 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCCTCCCCAGCAATGCGCTCAAAGA 1313 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| ||| || | Sbjct 1312 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGAT 1253 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 1252 GGACCTGCTTCAGCACCTTGTAGA 1229 >seq33192 Length=1908 Score = 120 bits (132), Expect = 4e-21 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 ||||||||||||||||||||| || | | || |||||||||||||||||| | || Sbjct 1558 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 1617 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || |||||||| |||||||||||| | ||| ||||| |||| | | ||| | Sbjct 1618 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGGACTCGATG 1677 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 ||||| |||||| ||| | || ||| || | ||| ||||||||| Sbjct 1678 ATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACGCGGCCCT 1726 >seq109629 Length=3266 Score = 100 bits (110), Expect = 3e-15 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||| | ||||||||| ||||| |||||||||||||| || ||||| || || ||||||| Sbjct 2026 CGGCCAGGCCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 2085 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277 ||||||| ||||| |||| |||||||| || || ||||| Sbjct 2086 AGATGCCTTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 2128 >seq87257 Length=542 Score = 100 bits (110), Expect = 3e-15 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095 ||||||||||||||||| ||| ||||| ||| | |||||||| | |||| | Sbjct 306 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGCCTCACGCCCACCGAGTTC 365 Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155 || | ||| || ||||| |||||||||||| |||||||||||||||| ||||||||| Sbjct 366 TTCTTCCACGCCATGGGCGGCCGCGAGGGCCTCATCGACACGGCCGTCAAAACGGCCGAG 425 Query 509156 ACGGG 509160 || || Sbjct 426 ACCGG 430 >seq36611 Length=16847 Score = 98.7 bits (108), Expect = 1e-14 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | || Sbjct 445 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 386 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| |||| ||||||| ||| || ||| |||||| || |||| ||| || || Sbjct 385 GTACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 332 >seq96250 Length=4551 Score = 89.7 bits (98), Expect = 6e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 1852372 CTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAG 1852431 |||||| || ||||| || ||||| ||| | |||| ||||| |||||| || || Sbjct 498 CTGGTAATCAGTGCCCCGGACAAATCTGAGCTTGTCCAGGGGCACCCCGATGCTCTCCAG 439 Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491 |||||| |||||| | |||||| ||||| || | || | ||| ||||| || | Sbjct 438 CATGGCTTTGATGACGTGCTCGTAGTAGCGGGTGCGCAGCTCCAGCAGCTCCCAGGGAGC 379 Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGAT 1852533 || |||||| |||| ||||| | ||||||||||||||| Sbjct 378 TTTCATGTTGTCCAGGTAAGCGTGGAGGTCGGCAAAGAGGAT 337 >seq53310 Length=26634 Score = 87.8 bits (96), Expect = 2e-11 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | || || | || ||||| | |||||| || || Sbjct 2500 GCTTGGCCAGCTCCCCGGGCAGCAGGAGCCGGGCAGCCGTCTGCACCTCGCGGCTGGTGA 2441 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| || | | | |||||||| ||| ||||| | | | | ||| || | || Sbjct 2440 TGGTGGCACGGCCGCTGTACTGCGCCAGGCGGGACGCCTCTGAGGCCAGGCGCTCAAACA 2381 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| |||||||| |||||||||| ||| | |||| |||||| ||| ||| |||| Sbjct 2380 TGTCATTGACAAAAGAGTTCATGATGCTCATGGCCTTGGAGGAGATAGCCAGGTCTGGGT 2321 Query 1254523 GCACCTGC 1254530 |||||||| Sbjct 2320 GCACCTGC 2313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6094123330952785