Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq65683 122 8e-23 seq108171 89.7 5e-13 >seq65683 Length=849 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| || || ||| | Sbjct 315 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCCAGC 256 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||| ||||| || ||||| ||||| Sbjct 255 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGATCAG 196 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| || || || || |||||||| || | | | |||| || || ||| Sbjct 195 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGACGGTCGTACCCTGTCCGACTACAAC 136 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || || ||||||||| |||| |||| || || Sbjct 135 ATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCGCCTGCGAGGTGG 89 >seq108171 Length=529 Score = 89.7 bits (98), Expect = 5e-13 Identities = 120/166 (72%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 138775 GCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTG 138834 |||| ||| ||| ||||| || || || |||||||| || || || ||||| ||| Sbjct 228 GCCAGCTCACAGCTGGCCTCCAGGGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTG 169 Query 138835 AGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGC 138894 |||| |||||| |||||||||| | || | | | || |||| ||||||||||| Sbjct 168 AGCAGCTGGGCCTGGGCGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGG 109 Query 138895 CCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGA-CGCT 138939 || |||||||| | |||| ||||| || ||| | || || |||| Sbjct 108 CCCTGCACGCCGATGCCGATGGGGCGGTGCCGCCGGTTGGAGCGCT 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449005649889400