Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq65683 122 8e-23
seq108171 89.7 5e-13
>seq65683
Length=849
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || || ||||| || || ||| |
Sbjct 315 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCCAGC 256
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || || |||||||||||||| ||||| || ||||| |||||
Sbjct 255 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGATCAG 196
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||| || || || || |||||||| || | | | |||| || || |||
Sbjct 195 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGACGGTCGTACCCTGTCCGACTACAAC 136
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || || ||||| || || ||||||||| |||| |||| || ||
Sbjct 135 ATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCGCCTGCGAGGTGG 89
>seq108171
Length=529
Score = 89.7 bits (98), Expect = 5e-13
Identities = 120/166 (72%), Gaps = 1/166 (1%)
Strand=Plus/Minus
Query 138775 GCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTG 138834
|||| ||| ||| ||||| || || || |||||||| || || || ||||| |||
Sbjct 228 GCCAGCTCACAGCTGGCCTCCAGGGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTG 169
Query 138835 AGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGC 138894
|||| |||||| |||||||||| | || | | | || |||| |||||||||||
Sbjct 168 AGCAGCTGGGCCTGGGCGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGG 109
Query 138895 CCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGA-CGCT 138939
|| |||||||| | |||| ||||| || ||| | || || ||||
Sbjct 108 CCCTGCACGCCGATGCCGATGGGGCGGTGCCGCCGGTTGGAGCGCT 63
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449005649889400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |