Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq123596 201 2e-45
seq53310 143 4e-28
seq36611 105 1e-16
seq33192 102 1e-15
seq109629 96.9 5e-14
seq87257 95.1 2e-13
seq108171 93.3 7e-13
seq96250 86.0 1e-10
>seq123596
Length=5871
Score = 201 bits (222), Expect = 2e-45
Identities = 191/244 (78%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| |||||||||||||||||| ||||||| || ||| |||
Sbjct 1471 TGTACTTGGTGACAGCCTTGGTGCCCTCTGAGACGGCGTGCTTGGCCAGCTCTCCGGGCA 1412
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| |||| ||| ||| ||||||||| |
Sbjct 1411 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAGT 1352
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| ||||||||| |||||| | ||||| || | ||||||||||| || |||||||
Sbjct 1351 GGGCCAGGCGGGAGGCCTCCCCAGCAATGCGCTCAAAGATGTCGTTGACGAAGGAGTTCA 1292
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| ||| || || |||||||| ||||||||||
Sbjct 1291 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGATGGACCTGCTTCAGCACCTTGT 1232
Query 1485710 AAAC 1485713
| ||
Sbjct 1231 AGAC 1228
>seq53310
Length=26634
Score = 143 bits (158), Expect = 4e-28
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || ||| |||
Sbjct 2539 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCCCCGGGCA 2480
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || || | || ||||| | ||||||| || ||| ||| || | | || |
Sbjct 2479 GCAGGAGCCGGGCAGCCGTCTGCACCTCGCGGCTGGTGATGGTGGCACGGCCGCT-GTAC 2421
Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648
||||||||||| ||||| | | | | ||| || | |||||| |||||||| ||||||
Sbjct 2420 TGCGCCAGGCGGGACGCCTCTGAGGCCAGGCGCTCAAACATGTCATTGACAAAAGAGTTC 2361
Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696
||||| ||| | ||| |||||| ||| ||| ||||||||||||
Sbjct 2360 ATGATGCTCATGGCCTTGGAGGAGATAGCCAGGTCTGGGTGCACCTGC 2313
>seq36611
Length=16847
Score = 105 bits (116), Expect = 1e-16
Identities = 91/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362
|||||||| || ||||| ||||||||||||||||| |||||||||| ||| || |||
Sbjct 444 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 385
Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415
|| |||||||||| | || || || ||||||||| || |||||||||||
Sbjct 384 TACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 332
>seq33192
Length=1908
Score = 102 bits (112), Expect = 1e-15
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638
|||| |||||||||||||||| || | ||||||||||||||||||||||||| ||
Sbjct 1558 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 1617
Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698
|||| || |||||||| ||||||||||| | || ||||| |||| | | || |
Sbjct 1618 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGGACTCGATG 1677
Query 2071699 ATGGCCGACCA 2071709
||||| ||||
Sbjct 1678 ATGGCGTACCA 1688
>seq109629
Length=3266
Score = 96.9 bits (106), Expect = 5e-14
Identities = 83/103 (81%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 2073650 CGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGT 2073709
|||| | ||||||||| ||||| | |||||||||||| || |||| ||||| || ||||
Sbjct 2026 CGGCCAGGCCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 2085
Query 2073710 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752
||||||| ||||| |||| |||||||| || ||| |||||
Sbjct 2086 AGATGCCTTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 2128
>seq87257
Length=542
Score = 95.1 bits (104), Expect = 2e-13
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 431022 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 431081
||||||||||||||||| ||| ||||| ||| | |||||||| | |||| |
Sbjct 306 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGCCTCACGCCCACCGAGTTC 365
Query 431082 TTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAG 431141
|| | ||| || ||||| |||||||| ||| |||||||||||||||| |||||||||
Sbjct 366 TTCTTCCACGCCATGGGCGGCCGCGAGGGCCTCATCGACACGGCCGTCAAAACGGCCGAG 425
Query 431142 ACGGG 431146
|| ||
Sbjct 426 ACCGG 430
>seq108171
Length=529
Score = 93.3 bits (102), Expect = 7e-13
Identities = 117/157 (75%), Gaps = 3/157 (2%)
Strand=Plus/Minus
Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGC-GGTTGAGGCGACGCGCGCCGGCGCTCTC 2070110
||| | | ||| || |||||||||||| ||| ||||||| | | || |||||||||
Sbjct 204 GCCCCGTAGTAAATGGTCTCAAAGATG-TGCTGGTTGAGCAGCTGGGCCTGGGCGCTCTC 146
Query 2070111 CCACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGG 2070170
| || | ||||| | || ||||||||||||||||||||||||| ||| || ||
Sbjct 145 GAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGG 86
Query 2070171 CCGGTGGCGCAGGTTCGAGTGCCGGGCCT-CGGGCAC 2070206
||||| ||| |||| ||| || ||||| |||| ||
Sbjct 85 GCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGGGGAC 49
>seq96250
Length=4551
Score = 86.0 bits (94), Expect = 1e-10
Identities = 121/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 2411714 GCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGA 2411773
|||||||||| |||| || |||||| ||| ||||| || || || ||| || |
Sbjct 499 GCTGGTAATCAGTGCCCCGGACAAATCTGAGCTTGTCCAGGGGCACCCCGATGCTCTCCA 440
Query 2411774 GCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCG 2411833
||||||| |||||| | |||||| ||||| || |||| | || ||||| || |
Sbjct 439 GCATGGCTTTGATGACGTGCTCGTAGTAGCGGGTGCGCAGCTCCAGCAGCTCCCAGGGAG 380
Query 2411834 TCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACC 2411883
|| ||||| |||| ||||| | ||||||||||||||| |||||
Sbjct 379 CTTTCATGTTGTCCAGGTAAGCGTGGAGGTCGGCAAAGAGGATTGTCACC 330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7899374862752595
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |