Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq123596 201 2e-45 seq53310 143 4e-28 seq36611 105 1e-16 seq33192 102 1e-15 seq109629 96.9 5e-14 seq87257 95.1 2e-13 seq108171 93.3 7e-13 seq96250 86.0 1e-10 >seq123596 Length=5871 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| |||||||||||||||||| ||||||| || ||| ||| Sbjct 1471 TGTACTTGGTGACAGCCTTGGTGCCCTCTGAGACGGCGTGCTTGGCCAGCTCTCCGGGCA 1412 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| ||| ||||||||| | Sbjct 1411 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAGT 1352 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||| | ||||| || | ||||||||||| || ||||||| Sbjct 1351 GGGCCAGGCGGGAGGCCTCCCCAGCAATGCGCTCAAAGATGTCGTTGACGAAGGAGTTCA 1292 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| || || |||||||| |||||||||| Sbjct 1291 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGATGGACCTGCTTCAGCACCTTGT 1232 Query 1485710 AAAC 1485713 | || Sbjct 1231 AGAC 1228 >seq53310 Length=26634 Score = 143 bits (158), Expect = 4e-28 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 2539 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCCCCGGGCA 2480 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || | || ||||| | ||||||| || ||| ||| || | | || | Sbjct 2479 GCAGGAGCCGGGCAGCCGTCTGCACCTCGCGGCTGGTGATGGTGGCACGGCCGCT-GTAC 2421 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||||||||||| ||||| | | | | ||| || | |||||| |||||||| |||||| Sbjct 2420 TGCGCCAGGCGGGACGCCTCTGAGGCCAGGCGCTCAAACATGTCATTGACAAAAGAGTTC 2361 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | ||| |||||| ||| ||| |||||||||||| Sbjct 2360 ATGATGCTCATGGCCTTGGAGGAGATAGCCAGGTCTGGGTGCACCTGC 2313 >seq36611 Length=16847 Score = 105 bits (116), Expect = 1e-16 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||||||||||||||| |||||||||| ||| || ||| Sbjct 444 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 385 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || || || ||||||||| || ||||||||||| Sbjct 384 TACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 332 >seq33192 Length=1908 Score = 102 bits (112), Expect = 1e-15 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| |||||||||||||||| || | ||||||||||||||||||||||||| || Sbjct 1558 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 1617 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| || |||||||| ||||||||||| | || ||||| |||| | | || | Sbjct 1618 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGGACTCGATG 1677 Query 2071699 ATGGCCGACCA 2071709 ||||| |||| Sbjct 1678 ATGGCGTACCA 1688 >seq109629 Length=3266 Score = 96.9 bits (106), Expect = 5e-14 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2073650 CGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGT 2073709 |||| | ||||||||| ||||| | |||||||||||| || |||| ||||| || |||| Sbjct 2026 CGGCCAGGCCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 2085 Query 2073710 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 ||||||| ||||| |||| |||||||| || ||| ||||| Sbjct 2086 AGATGCCTTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 2128 >seq87257 Length=542 Score = 95.1 bits (104), Expect = 2e-13 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 431022 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 431081 ||||||||||||||||| ||| ||||| ||| | |||||||| | |||| | Sbjct 306 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGCCTCACGCCCACCGAGTTC 365 Query 431082 TTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAG 431141 || | ||| || ||||| |||||||| ||| |||||||||||||||| ||||||||| Sbjct 366 TTCTTCCACGCCATGGGCGGCCGCGAGGGCCTCATCGACACGGCCGTCAAAACGGCCGAG 425 Query 431142 ACGGG 431146 || || Sbjct 426 ACCGG 430 >seq108171 Length=529 Score = 93.3 bits (102), Expect = 7e-13 Identities = 117/157 (75%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGC-GGTTGAGGCGACGCGCGCCGGCGCTCTC 2070110 ||| | | ||| || |||||||||||| ||| ||||||| | | || ||||||||| Sbjct 204 GCCCCGTAGTAAATGGTCTCAAAGATG-TGCTGGTTGAGCAGCTGGGCCTGGGCGCTCTC 146 Query 2070111 CCACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGG 2070170 | || | ||||| | || ||||||||||||||||||||||||| ||| || || Sbjct 145 GAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGG 86 Query 2070171 CCGGTGGCGCAGGTTCGAGTGCCGGGCCT-CGGGCAC 2070206 ||||| ||| |||| ||| || ||||| |||| || Sbjct 85 GCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGGGGAC 49 >seq96250 Length=4551 Score = 86.0 bits (94), Expect = 1e-10 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 2411714 GCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGA 2411773 |||||||||| |||| || |||||| ||| ||||| || || || ||| || | Sbjct 499 GCTGGTAATCAGTGCCCCGGACAAATCTGAGCTTGTCCAGGGGCACCCCGATGCTCTCCA 440 Query 2411774 GCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCG 2411833 ||||||| |||||| | |||||| ||||| || |||| | || ||||| || | Sbjct 439 GCATGGCTTTGATGACGTGCTCGTAGTAGCGGGTGCGCAGCTCCAGCAGCTCCCAGGGAG 380 Query 2411834 TCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACC 2411883 || ||||| |||| ||||| | ||||||||||||||| ||||| Sbjct 379 CTTTCATGTTGTCCAGGTAAGCGTGGAGGTCGGCAAAGAGGATTGTCACC 330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7899374862752595