Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq1591 84.2 2e-11 >seq1591 Length=29109 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/128 (75%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 146449 GACCATCATTAAGTTCGCGCAGGATTTTGTGGGCAGCAATAATATCCCCCTTCTCTACCA 146508 |||||||||||| || || ||| | |||||||||||||| || || | | ||| | | Sbjct 18118 GACCATCATTAACTTGGCTCAGAACTTTGTGGGCAGCAACAACCTCAACTTGCTCCAGCC 18177 Query 146509 GAT-GGGCAATTCGGAACAAGGTTGGAAGGAGGGAAGGACGCTGCAAGTCCCAGATATAT 146567 || || || || || |||||| || | |||||||| ||| |||| || || |||| || Sbjct 18178 CATCGGTCAGTTTGGCACAAGGCTGCACGGAGGGAAAGACTCTGCCAGCCCTCGATACAT 18237 Query 146568 TTTCACCA 146575 ||||||| Sbjct 18238 CTTCACCA 18245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520511603251400