Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq61518 114 1e-20 >seq61518 Length=7657 Score = 114 bits (126), Expect = 1e-20 Identities = 130/172 (76%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184 ||||||||||| || | ||| |||||||||||| | |||||| || ||| | | ||||| Sbjct 5992 AGCATTTGGGGACCAACCTGTGATGGCTTAGATCGGATTGTTGAGAGGTTTAATATGCCA 6051 Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244 ||||| ||||| || |||||| || | |||||||||||||| || || | || |||| Sbjct 6052 GAGCTGCAAGTTGGTGACTGGATCCTGTTTGAAAACATGGGTGCCTATA-CTGTTGCAGC 6110 Query 21245 -TCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 |||| || || || || |||| | |||| || |||||||| || ||| Sbjct 6111 AGCTTCTACTTTCAATGGATTCCAGAGGCCAACAATACACTATGTGATGTCA 6162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462626591876400