Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq65683 165 8e-36
seq108171 96.9 3e-15
>seq65683
Length=849
Score = 165 bits (182), Expect = 8e-36
Identities = 157/199 (79%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
||||| |||||||| || ||||| ||| || || |||| ||| || ||||||||||
Sbjct 119 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGT--ACGACCGTCTTCCAGCTGCTTGC 176
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| |||| |||| |||||| || |||||||||||||||||||| |||||| ||
Sbjct 177 CAGCGAAAATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCT 236
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | |||| |||||| |||||||||| |||| ||||| ||| ||||| ||||| |
Sbjct 237 TGACATTTTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGG 296
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||| ||||||||
Sbjct 297 TCTTGACGAAGATCTGCAT 315
>seq108171
Length=529
Score = 96.9 bits (106), Expect = 3e-15
Identities = 131/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGC 148558
||||| ||| | | ||| || || ||| || ||||| || ||||| ||||| || ||
Sbjct 262 GCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTGGCCTCCAGGGC 203
Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTA 148618
||||||||||| ||||| || ||| |||||||||| ||| |||| ||| |
Sbjct 202 CCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGCAGCTGGGCCTGGGCGCTCTCGAA 143
Query 148619 CGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCG 148678
|| | | || | | | || |||||||| |||||||| ||||| | ||| ||||| ||
Sbjct 142 GGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGGGCG 83
Query 148679 GTG 148681
|||
Sbjct 82 GTG 80
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482462388050200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |