Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq65683 165 8e-36 seq108171 96.9 3e-15 >seq65683 Length=849 Score = 165 bits (182), Expect = 8e-36 Identities = 157/199 (79%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 ||||| |||||||| || ||||| ||| || || |||| ||| || |||||||||| Sbjct 119 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGT--ACGACCGTCTTCCAGCTGCTTGC 176 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| |||| |||||| || |||||||||||||||||||| |||||| || Sbjct 177 CAGCGAAAATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCT 236 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| |||||| |||||||||| |||| ||||| ||| ||||| ||||| | Sbjct 237 TGACATTTTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGG 296 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 297 TCTTGACGAAGATCTGCAT 315 >seq108171 Length=529 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGC 148558 ||||| ||| | | ||| || || ||| || ||||| || ||||| ||||| || || Sbjct 262 GCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTGGCCTCCAGGGC 203 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTA 148618 ||||||||||| ||||| || ||| |||||||||| ||| |||| ||| | Sbjct 202 CCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGCAGCTGGGCCTGGGCGCTCTCGAA 143 Query 148619 CGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCG 148678 || | | || | | | || |||||||| |||||||| ||||| | ||| ||||| || Sbjct 142 GGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGGGCG 83 Query 148679 GTG 148681 ||| Sbjct 82 GTG 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482462388050200