Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq77623 147 3e-30
seq9546 84.2 3e-11
>seq77623
Length=24705
Score = 147 bits (162), Expect = 3e-30
Identities = 567/881 (64%), Gaps = 15/881 (2%)
Strand=Plus/Plus
Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179
||| ||||| || || || ||||| || ||| | | ||||| || | || ||
Sbjct 16183 ATCAAACTTATTAGCAAATAGGTGGTGGT--TTCGT-AGCATCCAGTTCAAGTCTCCTAC 16239
Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239
||| || || || || || || | ||| || || ||||| || || || | || || |
Sbjct 16240 TCCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGCGCACCTTT 16299
Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299
| ||| || || || |||| |||||||| || ||||| | | || | |||||| ||
Sbjct 16300 GGACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGA 16359
Query 162300 GGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
||||||||||| |||| || | | || || || || | || | |||||| | |
Sbjct 16360 AACGTCGTACTTGT-CACTGGAAGAAAATGCACCTGGGACTTCAGGGATTCTCTGAATTG 16418
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| |||||||||| || ||||| || || || || || | |||||| ||||||| | |
Sbjct 16419 TTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAACT---TAA 16475
Query 162419 CCGTTT---TATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGC 162475
||| | | | ||| | || || || ||| | || | ||| || || |
Sbjct 16476 GTATTTTGCTGTTTTCTAGTACATATCCTACAAAGCTTCTGCTAACTACAAAATAGGCAC 16535
Query 162476 TACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTA 162535
| |||||||| || || ||| | || || | | ||||||| || ||||| ||
Sbjct 16536 TGCCAGAAAAAACCGGAGTGCTCAGGGGTGGAAGTTGTTTGTCTATGCCTGTGTTCTTTA 16595
Query 162536 CCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGT 162595
| || || | | | | || ||| ||||||| | ||| ||| | |
Sbjct 16596 TTTTACCATCAATAATCTCATGGTGTTTCTTCCACCTTACTTCTTTATAAATAGGCATTT 16655
Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655
||| || || | ||||| |||| | || || | | ||| || || | |
Sbjct 16656 TTTCTGTTTCCAAGCTGTTTTCACCCTTAAGAGCTTTTAATTTCTCCACTATTTCCTGGT 16715
Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715
||||||| | |||||||| | || || || || || | ||||||||| || ||
Sbjct 16716 TGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGATATTTCCAGTTTGAACTTC 16775
Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775
|| ||| ||||| | | ||||| | || ||||| || | ||||| || || || |
Sbjct 16776 TTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCATATA 16835
Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835
| || ||||| ||| ||| | ||||||||| || ||||| || ||||| ||| |||
Sbjct 16836 CCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCA 16895
Query 162836 CGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893
| | ||| | || || | |||| | ||||| || | |||||| | ||||||
Sbjct 16896 CAG-CAGCAAAAAAGGATTCTGGAGACTTT-TTGTCTACATGGATGCAGTAAAAATTCTG 16953
Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953
|| ||||| || | || || | ||| || | |||||| || || || | ||||| ||
Sbjct 16954 TGGAGCGTATATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTAT 17013
Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994
|| || || || || || || || || || ||||||||
Sbjct 17014 TGAGTAAGCAATTGGAAATTCTGCTTCTTCATTACTGAGAG 17054
>seq9546
Length=11392
Score = 84.2 bits (92), Expect = 3e-11
Identities = 233/354 (66%), Gaps = 5/354 (1%)
Strand=Plus/Minus
Query 162060 CAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTC 162119
||||| ||| || || || ||||| || ||||||||||| || |||| ||
Sbjct 1035 CAGGGCCTTGTGGCGCAGGTACTCCTCGAGACACTGGACGGCCGCATCGTCCACCTCGGG 976
Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179
||||||||||| || || || || ||| | || || ||||| | || |||
Sbjct 975 GTCGAACTTGTTGGCCAAGAGATGGTGC---TGCTGCAGCATCCAGGGCACGTCGCCCAC 919
Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239
||| | | ||| |||| ||| ||| |||| |||| ||||| || || || |
Sbjct 918 CCCGTAGATGCAGACGGCGCGCTGGTGGCGGCCGGTGCAAGGCGGGTAGGACGCGCCCTT 859
Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299
| | |||||||| | | |||||||| || | | | | || | |||||| ||
Sbjct 858 GCTGATGTCCCCCTCCATGAACTGCCACTTGACTAGGCGGGGAAGGGCGTTCATGTCCGA 799
Query 162300 GGTGTCGTACTTGTACACTG-ACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
| | |||||||| | ||| | ||| | | || || |||||||||| | | || |
Sbjct 798 GAGCTGGTACTTGT-CGCTGAAGGGCGTGCCCCCCGGCACACCCGGCATGCGGTTCAGGG 740
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACT 162412
| ||||| | ||| ||||| || || || | ||||| |||||||| | |||||
Sbjct 739 TGGCCCAGACGTGCTCGTCAGGGCTGTAGCTGTCCTTGGACCACTCGAGGAACT 686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577285222408000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |