Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq77623 147 3e-30 seq9546 84.2 3e-11 >seq77623 Length=24705 Score = 147 bits (162), Expect = 3e-30 Identities = 567/881 (64%), Gaps = 15/881 (2%) Strand=Plus/Plus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||| ||||| || || || ||||| || ||| | | ||||| || | || || Sbjct 16183 ATCAAACTTATTAGCAAATAGGTGGTGGT--TTCGT-AGCATCCAGTTCAAGTCTCCTAC 16239 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| || || || || || || | ||| || || ||||| || || || | || || | Sbjct 16240 TCCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGCGCACCTTT 16299 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | ||| || || || |||| |||||||| || ||||| | | || | |||||| || Sbjct 16300 GGACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGA 16359 Query 162300 GGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 ||||||||||| |||| || | | || || || || | || | |||||| | | Sbjct 16360 AACGTCGTACTTGT-CACTGGAAGAAAATGCACCTGGGACTTCAGGGATTCTCTGAATTG 16418 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | |||||||||| || ||||| || || || || || | |||||| ||||||| | | Sbjct 16419 TTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAACT---TAA 16475 Query 162419 CCGTTT---TATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGC 162475 ||| | | | ||| | || || || ||| | || | ||| || || | Sbjct 16476 GTATTTTGCTGTTTTCTAGTACATATCCTACAAAGCTTCTGCTAACTACAAAATAGGCAC 16535 Query 162476 TACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTA 162535 | |||||||| || || ||| | || || | | ||||||| || ||||| || Sbjct 16536 TGCCAGAAAAAACCGGAGTGCTCAGGGGTGGAAGTTGTTTGTCTATGCCTGTGTTCTTTA 16595 Query 162536 CCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGT 162595 | || || | | | | || ||| ||||||| | ||| ||| | | Sbjct 16596 TTTTACCATCAATAATCTCATGGTGTTTCTTCCACCTTACTTCTTTATAAATAGGCATTT 16655 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 ||| || || | ||||| |||| | || || | | ||| || || | | Sbjct 16656 TTTCTGTTTCCAAGCTGTTTTCACCCTTAAGAGCTTTTAATTTCTCCACTATTTCCTGGT 16715 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 ||||||| | |||||||| | || || || || || | ||||||||| || || Sbjct 16716 TGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGATATTTCCAGTTTGAACTTC 16775 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 || ||| ||||| | | ||||| | || ||||| || | ||||| || || || | Sbjct 16776 TTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCATATA 16835 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835 | || ||||| ||| ||| | ||||||||| || ||||| || ||||| ||| ||| Sbjct 16836 CCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCA 16895 Query 162836 CGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893 | | ||| | || || | |||| | ||||| || | |||||| | |||||| Sbjct 16896 CAG-CAGCAAAAAAGGATTCTGGAGACTTT-TTGTCTACATGGATGCAGTAAAAATTCTG 16953 Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953 || ||||| || | || || | ||| || | |||||| || || || | ||||| || Sbjct 16954 TGGAGCGTATATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTAT 17013 Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || || || || || || || || || || |||||||| Sbjct 17014 TGAGTAAGCAATTGGAAATTCTGCTTCTTCATTACTGAGAG 17054 >seq9546 Length=11392 Score = 84.2 bits (92), Expect = 3e-11 Identities = 233/354 (66%), Gaps = 5/354 (1%) Strand=Plus/Minus Query 162060 CAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTC 162119 ||||| ||| || || || ||||| || ||||||||||| || |||| || Sbjct 1035 CAGGGCCTTGTGGCGCAGGTACTCCTCGAGACACTGGACGGCCGCATCGTCCACCTCGGG 976 Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||||||||||| || || || || ||| | || || ||||| | || ||| Sbjct 975 GTCGAACTTGTTGGCCAAGAGATGGTGC---TGCTGCAGCATCCAGGGCACGTCGCCCAC 919 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| | | ||| |||| ||| ||| |||| |||| ||||| || || || | Sbjct 918 CCCGTAGATGCAGACGGCGCGCTGGTGGCGGCCGGTGCAAGGCGGGTAGGACGCGCCCTT 859 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | | |||||||| | | |||||||| || | | | | || | |||||| || Sbjct 858 GCTGATGTCCCCCTCCATGAACTGCCACTTGACTAGGCGGGGAAGGGCGTTCATGTCCGA 799 Query 162300 GGTGTCGTACTTGTACACTG-ACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | | |||||||| | ||| | ||| | | || || |||||||||| | | || | Sbjct 798 GAGCTGGTACTTGT-CGCTGAAGGGCGTGCCCCCCGGCACACCCGGCATGCGGTTCAGGG 740 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACT 162412 | ||||| | ||| ||||| || || || | ||||| |||||||| | ||||| Sbjct 739 TGGCCCAGACGTGCTCGTCAGGGCTGTAGCTGTCCTTGGACCACTCGAGGAACT 686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577285222408000