Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq65683 102 5e-17 >seq65683 Length=849 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | |||||| || |||||| ||||| || |||||||| ||||| Sbjct 89 CCACCTCGCAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 148 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| |||| || || || || ||||||| | ||||||||| | || Sbjct 149 AGGGTACGACCGTCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGG 208 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | ||| ||| ||||||||| | ||||| Sbjct 209 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CATTTTCAATGGTGTCGCTGGGCTCCAC 267 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 268 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328068615681600