Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq123596 161 1e-33
seq33192 120 4e-21
seq53310 105 1e-16
seq36611 98.7 1e-14
seq109629 91.5 2e-12
seq87257 91.5 2e-12
>seq123596
Length=5871
Score = 161 bits (178), Expect = 1e-33
Identities = 175/231 (76%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||||||||| |||||||| || || |||| |||| ||| |||| |||
Sbjct 1229 TCTACAAGGTGCTGAAGCAGGTCCATCCTGACACCGG-----CATC-TCCTCCAAGGCCA 1282
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| || ||||||||||| | || ||||| | |||||| |
Sbjct 1283 TGGGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATTGCTGGGGAGGCCTCCC 1342
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||| | || |||||||||| ||| ||| | || ||||||||||| |||||||
Sbjct 1343 GCCTGGCCCACTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGC 1402
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | ||| ||| || ||||||| |||||||||||| ||||||||||
Sbjct 1403 GCCTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTCTCAGAGGGCACCA 1453
>seq33192
Length=1908
Score = 120 bits (132), Expect = 4e-21
Identities = 111/138 (80%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150
||| |||||| ||||| ||| | |||| | ||||| ||||| ||||||||| |||||
Sbjct 1694 CAGCTCTGGTACGCCATCATCGAGTCCCAGACTGAGACTGGCACCCCCTACATGCTCTAC 1635
Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209
|||||| || |||| || ||||||||||||||||||||||||| | || | |||
Sbjct 1634 AAGGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 1576
Query 262210 CCTGTGCACCGAGATCGT 262227
||||||||||||||||||
Sbjct 1575 CCTGTGCACCGAGATCGT 1558
>seq53310
Length=26634
Score = 105 bits (116), Expect = 1e-16
Identities = 154/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 724928 GCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTC 724987
|||||||||||| ||| ||| ||| ||| |||| ||||| |||||||||||
Sbjct 2313 GCAGGTGCACCCAG--ACCT---GGCTATC-TCCTCCAAGGCCATGAGCATCATGAACTC 2366
Query 724988 GTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAA 725047
|||||||| |||||| | || ||| | | | | ||||| |||||||||| | ||
Sbjct 2367 TTTTGTCAATGACATGTTTGAGCGCCTGGCCTCAGAGGCGTCCCGCCTGGCGCAGTACAG 2426
Query 725048 CAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGG 725107
| || ||| ||| || |||||| | ||||| || | || || | ||| |||
Sbjct 2427 CGGCCGTGCCACCATCACCAGCCGCGAGGTGCAGACGGCTGCCCGGCTCCTGCTGCCCGG 2486
Query 725108 CGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| ||||||| |||||| ||||||||||||||||
Sbjct 2487 GGAGCTGGCCAAGCACGCTGTCTCCGAGGGCACCA 2521
>seq36611
Length=16847
Score = 98.7 bits (108), Expect = 1e-14
Identities = 91/114 (80%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
|||||||||||||| || ||||| ||| || ||| | |||||||||| |||||
Sbjct 332 GAGCCGCTGCTGCGGGAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGAC 391
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829
|| ||| | ||||| ||| ||||||||||||||||| ||||| || ||||||||
Sbjct 392 ATCTGGCAGATGTA-CAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 444
>seq109629
Length=3266
Score = 91.5 bits (100), Expect = 2e-12
Identities = 82/103 (80%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029
||||| ||| || |||||||| ||| ||||| |||||||| ||||| || ||||||
Sbjct 2128 TGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAG 2069
Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072
|| || |||||||||||| | ||||| |||||||| | ||||
Sbjct 2068 TGTGCCCTCATCTCCAAGTCTGCCGGGGGCATCGGCCTGGCCG 2026
>seq87257
Length=542
Score = 91.5 bits (100), Expect = 2e-12
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1816167 CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACA 1816226
|||| || |||||||||||||||| ||||||||||||||||| || ||| || || |
Sbjct 423 CGGCCGTTTTGACGGCCGTGTCGATGAGGCCCTCGCGGCCGCCCATGGCGTGGAAGAAGA 364
Query 1816227 TCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGCGCACAAAGCCGCGGCTCTCGGG 1816284
|||| | |||||||| | ||| ||||| ||| |||||||||||||||||
Sbjct 363 ACTCGGTGGGCGTGAGGCCGGCCAGGTAGGAGTTCTCCACGAAGCCGCGGCTCTCGGG 306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7162513456234010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |