Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq123596 161 1e-33 seq33192 120 4e-21 seq53310 105 1e-16 seq36611 98.7 1e-14 seq109629 91.5 2e-12 seq87257 91.5 2e-12 >seq123596 Length=5871 Score = 161 bits (178), Expect = 1e-33 Identities = 175/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| || || |||| |||| ||| |||| ||| Sbjct 1229 TCTACAAGGTGCTGAAGCAGGTCCATCCTGACACCGG-----CATC-TCCTCCAAGGCCA 1282 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| | || ||||| | |||||| | Sbjct 1283 TGGGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATTGCTGGGGAGGCCTCCC 1342 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | || ||||||||||| ||||||| Sbjct 1343 GCCTGGCCCACTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGC 1402 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| |||||||||||| |||||||||| Sbjct 1403 GCCTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTCTCAGAGGGCACCA 1453 >seq33192 Length=1908 Score = 120 bits (132), Expect = 4e-21 Identities = 111/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | ||||| ||||| ||||||||| ||||| Sbjct 1694 CAGCTCTGGTACGCCATCATCGAGTCCCAGACTGAGACTGGCACCCCCTACATGCTCTAC 1635 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||| || |||| || ||||||||||||||||||||||||| | || | ||| Sbjct 1634 AAGGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 1576 Query 262210 CCTGTGCACCGAGATCGT 262227 |||||||||||||||||| Sbjct 1575 CCTGTGCACCGAGATCGT 1558 >seq53310 Length=26634 Score = 105 bits (116), Expect = 1e-16 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 724928 GCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTC 724987 |||||||||||| ||| ||| ||| ||| |||| ||||| ||||||||||| Sbjct 2313 GCAGGTGCACCCAG--ACCT---GGCTATC-TCCTCCAAGGCCATGAGCATCATGAACTC 2366 Query 724988 GTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAA 725047 |||||||| |||||| | || ||| | | | | ||||| |||||||||| | || Sbjct 2367 TTTTGTCAATGACATGTTTGAGCGCCTGGCCTCAGAGGCGTCCCGCCTGGCGCAGTACAG 2426 Query 725048 CAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGG 725107 | || ||| ||| || |||||| | ||||| || | || || | ||| ||| Sbjct 2427 CGGCCGTGCCACCATCACCAGCCGCGAGGTGCAGACGGCTGCCCGGCTCCTGCTGCCCGG 2486 Query 725108 CGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||||| |||||| |||||||||||||||| Sbjct 2487 GGAGCTGGCCAAGCACGCTGTCTCCGAGGGCACCA 2521 >seq36611 Length=16847 Score = 98.7 bits (108), Expect = 1e-14 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || ||||| ||| || ||| | |||||||||| ||||| Sbjct 332 GAGCCGCTGCTGCGGGAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGAC 391 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | ||||| ||| ||||||||||||||||| ||||| || |||||||| Sbjct 392 ATCTGGCAGATGTA-CAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 444 >seq109629 Length=3266 Score = 91.5 bits (100), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| ||| || |||||||| ||| ||||| |||||||| ||||| || |||||| Sbjct 2128 TGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAG 2069 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 || || |||||||||||| | ||||| |||||||| | |||| Sbjct 2068 TGTGCCCTCATCTCCAAGTCTGCCGGGGGCATCGGCCTGGCCG 2026 >seq87257 Length=542 Score = 91.5 bits (100), Expect = 2e-12 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1816167 CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACA 1816226 |||| || |||||||||||||||| ||||||||||||||||| || ||| || || | Sbjct 423 CGGCCGTTTTGACGGCCGTGTCGATGAGGCCCTCGCGGCCGCCCATGGCGTGGAAGAAGA 364 Query 1816227 TCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGCGCACAAAGCCGCGGCTCTCGGG 1816284 |||| | |||||||| | ||| ||||| ||| ||||||||||||||||| Sbjct 363 ACTCGGTGGGCGTGAGGCCGGCCAGGTAGGAGTTCTCCACGAAGCCGCGGCTCTCGGG 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7162513456234010