Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_027016.1
Length=226084
Score E
Sequences producing significant alignments: (Bits) Value
seq44322 116 5e-21
>seq44322
Length=22867
Score = 116 bits (128), Expect = 5e-21
Identities = 199/289 (69%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664
|| ||||| || | |||||||||| | ||||| || ||||| ||| | || || |||
Sbjct 1161 AAAGAGATGGCAGCGGAGCTGGAGGAGCTGTACGGGGACATCGATGCCATGGAGCTGTAC 1220
Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724
| | | || | || || || | |||| |||||| |||| || | | | |||
Sbjct 1221 CCAGGCCTGCTGGTGGAGAAGCCCCGGCCCGGGGCCATCTTCGGCGAGACCATGGTGGAG 1280
Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784
||| || ||||||||||||| ||| || || |||| |||||||||||| | |||
Sbjct 1281 ATGGGTGCGCCGTTCTCCCTGAAGGGGCTGATGGGCAACGCCATCTGCTCCCCCGAGTAC 1340
Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844
||||| | || ||| |||| || | | ||| ||||||| | | || ||||
Sbjct 1341 TGGAAGCCCAGCACCTTCGGGGGCAAGGTTGGCTTCGACATCGTCAACACGGCCTCCCTG 1400
Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCC 214893
||| |||||||| | |||||||||||| ||||| || | || ||||
Sbjct 1401 CAGAAGCTCATCTGCAACAACGTCAAGGGCTGTCCCTTCACTGCCTTCC 1449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 721906731655200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |