Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq44322 116 5e-21 >seq44322 Length=22867 Score = 116 bits (128), Expect = 5e-21 Identities = 199/289 (69%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664 || ||||| || | |||||||||| | ||||| || ||||| ||| | || || ||| Sbjct 1161 AAAGAGATGGCAGCGGAGCTGGAGGAGCTGTACGGGGACATCGATGCCATGGAGCTGTAC 1220 Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724 | | | || | || || || | |||| |||||| |||| || | | | ||| Sbjct 1221 CCAGGCCTGCTGGTGGAGAAGCCCCGGCCCGGGGCCATCTTCGGCGAGACCATGGTGGAG 1280 Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784 ||| || ||||||||||||| ||| || || |||| |||||||||||| | ||| Sbjct 1281 ATGGGTGCGCCGTTCTCCCTGAAGGGGCTGATGGGCAACGCCATCTGCTCCCCCGAGTAC 1340 Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844 ||||| | || ||| |||| || | | ||| ||||||| | | || |||| Sbjct 1341 TGGAAGCCCAGCACCTTCGGGGGCAAGGTTGGCTTCGACATCGTCAACACGGCCTCCCTG 1400 Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCC 214893 ||| |||||||| | |||||||||||| ||||| || | || |||| Sbjct 1401 CAGAAGCTCATCTGCAACAACGTCAAGGGCTGTCCCTTCACTGCCTTCC 1449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721906731655200