Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq17341 132 7e-26 seq36611 125 1e-23 >seq17341 Length=11243 Score = 132 bits (146), Expect = 7e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || | ||||||||| || || | ||| | Sbjct 768 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 827 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 828 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 887 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 888 CAACCACTCTCTCACC 903 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||||||| | ||||| || ||||||||||| ||||||||||||||||| ||||||||| Sbjct 2888 ATCCACTTCAGAGCCCAGTCTGCTTTCTTCTTAACACAAGGCATTGTTTCAATAGCATTA 2947 Query 39854 AA 39855 || Sbjct 2948 AA 2949 >seq36611 Length=16847 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | ||| |||||||| |||||||||||||||| || | || | Sbjct 2969 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 2910 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| |||||||||||||| ||||| || |||||||| | Sbjct 2909 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAGG 2850 Query 39759 CAAC 39762 | || Sbjct 2849 CTAC 2846 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||| |||||||| | || |||||||| || || ||||| || ||||| || |||||| Sbjct 4182 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTTGTCTTGCCT 4123 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAT 39418 |||| || || ||||||||||| ||||| ||||| ||| || ||| Sbjct 4122 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTAT 4075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685546960372200