Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq72070 93.3 5e-14 >seq72070 Length=2916 Score = 93.3 bits (102), Expect = 5e-14 Identities = 100/131 (76%), Gaps = 6/131 (5%) Strand=Plus/Minus Query 118155 AACTCACCCGCGAGGG---TGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCAC 118211 ||||| |||| |||| ||||| | ||||| ||| | ||||| ||||| | | || Sbjct 1327 AACTCCCCCGAGAGGACCCTGCGTGTG---TAGATGTTGCTGGTGTAGGGCTCGATGGAC 1271 Query 118212 TCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTG 118271 || ||||| |||| ||| ||||| ||||||||||| |||||||| | ||||| |||||| Sbjct 1270 TCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCTGTTGGCATGGGGGAGATGAGGAGGCTG 1211 Query 118272 TTACGGAGACC 118282 || | || ||| Sbjct 1210 TTCCTGACACC 1200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617209113563800