Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq65683 104 7e-17 seq126374 98.7 3e-15 seq25636 98.7 3e-15 seq36611 89.7 2e-12 >seq65683 Length=849 Score = 104 bits (114), Expect = 7e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||| || ||||| || || || || || || | || || || ||||| | Sbjct 109 CAAG-TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTACGACCGTCTTCCA 167 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||| || || || | |||||||||||||| || ||||| || || || | Sbjct 168 GCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGA 227 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| ||||| | || || || || || || || | ||||| | Sbjct 228 TCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGC 287 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || || || || ||||||||| Sbjct 288 CCGTCAGGGTCTTGACGAAGATCTGCATT 316 >seq126374 Length=5619 Score = 98.7 bits (108), Expect = 3e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 183252 GCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATTCT 183311 || || |||||||||||||| || ||||| |||||||||||||| |||||| || Sbjct 1976 GCCTGGACAGCTGCACCATAGGCCACAGCCTCATCTGGGTTAATACCACGAGAAGGCTCC 1917 Query 183312 TTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCG 183371 || ||||| || || ||| || | ||||| ||||| || || | ||| || ||||| Sbjct 1916 TTCCCATTGAAGAACTCTTTAACGAGCTGTTGGATTTTGGGGATGCGAGTCGATCCACCA 1857 Query 183372 ACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCA 183431 || | || | ||||| |||| | || | | | ||||||| | |||||| | | Sbjct 1856 ACCAGGACAATCTCATCAATATCAGACTTCTTCAGGTCAGAATCTTCCAGAACTTTCTGA 1797 Query 183432 ACAGGGTCCATAGT 183445 ||||| | |||||| Sbjct 1796 ACAGGCTTCATAGT 1783 Score = 86.0 bits (94), Expect = 2e-11 Identities = 123/173 (71%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| || || || || || ||| || ||| || || || || Sbjct 1108 ACAGCTGCTGCCATTGCTTACGGACTGGACAA---GAGAGAGGGAGAGAAGAACATCCTC 1164 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | || || | || ||||| || |||||||| || || || ||| |||| | ||| | Sbjct 1165 GTATTCGACCTGGGCGGTGGAACCTTTGATGTGTCCCTCCTCACAATTGACAACGGAGTC 1224 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || ||| ||||||||| || | ||||||||||| ||||| Sbjct 1225 TTTGAAGTTGTGGCTACTAATGGTGATACTCACTTGGGTGGAGAAGACTTTGA 1277 >seq25636 Length=10948 Score = 98.7 bits (108), Expect = 3e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| || | ||||| ||||||||||| ||||| ||||||| ||||||||||||| Sbjct 8826 ATGCAGTAGTGACTGTCCCAGCCTATTTCAATGACTCCCAGCGCCAGGCAACAAAAGATG 8767 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | || || ||| | || || || ||||| || || || ||||| || || || | Sbjct 8766 CTGGAACTATCGCAGGGCTCAACGTCCTGAGAATCATCAACGAGCCCACAGCAGCTGCCA 8707 Query 349728 TTGCATATGGGCTTGATAA 349746 |||| || ||||| || || Sbjct 8706 TTGCCTACGGGCTGGACAA 8688 >seq36611 Length=16847 Score = 89.7 bits (98), Expect = 2e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| || | |||||| ||||| || | |||||||||||| ||||| | Sbjct 2972 ATACCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 2913 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||||| || ||||| || || ||||| || |||| Sbjct 2912 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAA 2853 Query 223839 ACGCTACTA 223847 | ||||||| Sbjct 2852 AGGCTACTA 2844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1512175211284815