Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_028099.1
Length=122522
Score E
Sequences producing significant alignments: (Bits) Value
seq102076 93.3 3e-14
>seq102076
Length=9597
Score = 93.3 bits (102), Expect = 3e-14
Identities = 137/190 (72%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 111748 ATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGT 111807
||| ||||| | ||| || | || || || |||| || ||||||||||| |||||
Sbjct 4047 ATAAAATGGTTAAATAGCCTAC-CTTCAGCCCCGTGACATGGGCAATCATGTACGTGAGC 4105
Query 111808 AGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATAT 111867
|| || || ||||| || || ||||| ||||| ||||| ||||| || || |||||
Sbjct 4106 AGTGAATAGCTGGCAATATTGAAAGGCACTCCTAGTCCCATGTCTCCAGACCTCTGATAG 4165
Query 111868 AGCTGACATGATAGTTTA-TTTTGTGACACATAAAATTGACAAAGTACATGACAAGGAGG 111926
|| || || || | || | || || ||||| || || ||||| |||| || |||||
Sbjct 4166 AGTTGGCAAGACAATTCACCATTCAGA-ACATAGAACTGGCAAAGGGCATGGCACGGAGG 4224
Query 111927 CAATGCCATC 111936
||| ||||||
Sbjct 4225 CAAAGCCATC 4234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 391187969767615
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |