Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq102076 93.3 3e-14 >seq102076 Length=9597 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/190 (72%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 111748 ATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGT 111807 ||| ||||| | ||| || | || || || |||| || ||||||||||| ||||| Sbjct 4047 ATAAAATGGTTAAATAGCCTAC-CTTCAGCCCCGTGACATGGGCAATCATGTACGTGAGC 4105 Query 111808 AGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATAT 111867 || || || ||||| || || ||||| ||||| ||||| ||||| || || ||||| Sbjct 4106 AGTGAATAGCTGGCAATATTGAAAGGCACTCCTAGTCCCATGTCTCCAGACCTCTGATAG 4165 Query 111868 AGCTGACATGATAGTTTA-TTTTGTGACACATAAAATTGACAAAGTACATGACAAGGAGG 111926 || || || || | || | || || ||||| || || ||||| |||| || ||||| Sbjct 4166 AGTTGGCAAGACAATTCACCATTCAGA-ACATAGAACTGGCAAAGGGCATGGCACGGAGG 4224 Query 111927 CAATGCCATC 111936 ||| |||||| Sbjct 4225 CAAAGCCATC 4234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391187969767615