Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq109629 91.5 2e-13 seq33192 91.5 2e-13 seq108171 84.2 2e-11 >seq109629 Length=3266 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 ||||||||||||| ||||||||||| | || |||| ||| || || ||||||||||| Sbjct 2034 CCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGTAGATGCCT 2093 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 ||||| |||||||||||| | |||||||||||| Sbjct 2094 TCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCAGCT 2131 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||| ||||| || |||||||| |||||||| || ||||||||||| || || ||| Sbjct 2131 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAG 2072 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 |||| || | ||||||||||| ||||||| ||||| Sbjct 2071 CAGTGTGCCCTCATCTCCAAGTCTGCCGGGGGCATCGG 2034 >seq33192 Length=1908 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| || ||||||| || ||||||||||||| | ||||| ||||||||| Sbjct 1554 CTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT 1613 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTT 79217 |||| ||| |||| |||||||||| |||||| || || || |||||| ||| || Sbjct 1614 CTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGGACTC 1673 Query 79218 GAGAACGCCGTCCCAGATGTCCCGGGCC 79245 || | | ||| ||||| | | ||||| Sbjct 1674 GATGATGGCGTACCAGAGCTGCTGGGCC 1701 >seq108171 Length=529 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 20089 GCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGG 20148 ||| ||||| || |||| |||||||| |||||||||||||||| ||||| || | | Sbjct 76 GCGGCACCGCCCCATCGGCATCGGCGTGCAGGGCCTGGCCGACGCCTTCATCCTGATGAG 135 Query 20149 CCTCTCATTCGACGATC-CCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGT 20207 || | ||||| || | || |||| | ||||||| || |||||| ||| || | | Sbjct 136 GTTCCCCTTCGA-GAGCGCCCAGGCCCAGCTGCTCAACCAGCACATCTTTGAGACCATTT 194 Query 20208 ACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGT 20267 || ||| |||||| || || || || |||| ||| | ||||| ||||| || | Sbjct 195 ACTACGGGGCCCTGGAGGCCAGCTGTGAGCTGGCCAGGGAGCAGGGCCCCTACGACACCT 254 Query 20268 TCAAGGGGTCGCC 20280 | |||| || || Sbjct 255 ACCAGGGCTCTCC 267 Score = 82.4 bits (90), Expect = 8e-11 Identities = 143/204 (70%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 78722 CCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT---GACT 78778 |||| || |||| | | || ||||| | |||| |||| |||| || || || | || Sbjct 269 CCGGAGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTGGCCT 210 Query 78779 CGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGG 78838 | ||||||| ||| ||| | | ||| |||||| || ||||||| | |||| || Sbjct 209 C---CAGGGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGCAGCTGGGCCTGGG 153 Query 78839 T-CTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATA 78897 ||| ||||| | | | | || |||||| | |||||||||||||| |||||||| Sbjct 152 CGCTC-TCGAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATG 94 Query 78898 GCGATCGGTCGGTGGCGCATGTTG 78921 |||| || ||||| ||| |||| Sbjct 93 CCGATGGGGCGGTGCCGCCGGTTG 70 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547437315301200