Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1591 93.3 5e-14 seq109629 87.8 2e-12 seq39295 86.0 7e-12 seq17341 86.0 7e-12 >seq1591 Length=29109 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | || || || || ||||| || |||||||| Sbjct 18243 GTGAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCTCCGTGCAGCCTTGTGCCAAACTGA 18184 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 || ||||| ||| | ||||||||||||| |||||| || ||||||||||| || Sbjct 18183 CCGATGGGCTGGAGCAAGTTGAGGTTGTTGCTGCCCACAAAGTTCTGAGCCAAGTT 18128 >seq109629 Length=3266 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||||||| || |||||||| ||| ||||| ||||||||||| || || ||| Sbjct 2131 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAG 2072 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 ||||||||| ||||||||||| | || || ||||| Sbjct 2071 CAGTGTGCCCTCATCTCCAAGTCTGCCGGGGGCATCGG 2034 >seq39295 Length=58204 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| || |||| ||| ||||||||||| |||||| ||| | || || || || Sbjct 13923 GTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTGCCAAACTGA 13864 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | || |||| ||||| || |||||||| ||||||||||||||| Sbjct 13863 CCAATAGGTTGTAGCAGATTCACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 13804 Query 117425 ATCGT 117429 || || Sbjct 13803 ATAGT 13799 >seq17341 Length=11243 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | | |||||||| || || | ||||||| Sbjct 770 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 829 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| |||||||| |||||||||||||| || |||||||| Sbjct 830 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 889 Query 74892 AC 74893 || Sbjct 890 AC 891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546131110079000