Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq65683 165 9e-36 seq108171 127 2e-24 >seq65683 Length=849 Score = 165 bits (182), Expect = 9e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || |||||||| || || || ||||| ||| | | Sbjct 316 AATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 257 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| |||| | ||||| || || || |||||||| || || ||||| || || Sbjct 256 CGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGATCA 197 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || ||||| ||||| ||||| || || || | ||||||||| | ||||| || Sbjct 196 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGACGGTCGTACCCTGTCCGACTACAA 137 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || ||||||||||| || | || |||| || || |||||| Sbjct 136 CATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCGCCTGCGAGGTGGA 88 >seq108171 Length=529 Score = 127 bits (140), Expect = 2e-24 Identities = 163/221 (74%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 80573 CCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC---GACT 80629 ||||||| ||| | | || ||||| ||||||| | | ||||||||||||| | || Sbjct 269 CCGGAGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTGGCCT 210 Query 80630 CCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGC-GCGCCTGT 80688 ||| ||||| ||| |||||| |||||||| | || ||| | | || | ||||| Sbjct 209 CCA---GGGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAG-CAGCTGGGCCTGG 154 Query 80689 GGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATG 80748 | | ||||| | || | ||||| ||||| |||| ||||||||||| ||||||||| Sbjct 153 GCGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATG 94 Query 80749 GCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGG 80789 |||| |||||||| ||| ||| || |||||||||| ||| Sbjct 93 CCGATGGGGCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGG 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569179723987600