Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq9546 268 1e-66
>seq9546
Length=11392
Score = 268 bits (296), Expect = 1e-66
Identities = 672/1005 (67%), Gaps = 26/1005 (3%)
Strand=Plus/Plus
Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGG- 13658
|||| || || ||| |||| || ||| |||||| |||||| ||| ||| || |
Sbjct 35 CGCCCGGCGAGTACCTGAATATTACGAGGGACTGCAGAGCCTTCAAGAA-GACGCGGCGC 93
Query 13659 TATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTG 13718
|| ||| | || || |||| ||| |||| ||||| |||||||||||||| || ||
Sbjct 94 TACATCGAGTTTCCGCTCAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGGTC 153
Query 13719 ATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAAC 13778
||||| ||||| ||||| ||||| ||||| || || || || |||||||||| ||||||
Sbjct 154 ATCCATCACAAAATCGACATGTTTGAGCGGCTTCTACGGTCCGTCTACGCCCCCCAGAAC 213
Query 13779 CTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGG-GGC-GTCTCGG 13836
||||||| ||||| ||||| ||| ||| | || ||| | || ||| || |
Sbjct 214 GTCTACTGTGTCCATATGGACAGCAAATCCCCGGCCGCCTTC--CAGGAGGCTGTGAGAG 271
Query 13837 CCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACG 13896
|||| || |||||||| ||||| | ||||| ||| ||| | |||||| || |
Sbjct 272 CCATTGCTGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTATG 331
Query 13897 GCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCG 13956
| ||||| || ||||||||||||| | ||||||| ||||||| |||||
Sbjct 332 CCGCCTGGTCCCGGCTGCAGGCCGACCTTAACTGCATGCAGGACCTGCTGCAGAGCCCCG 391
Query 13957 TCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGG 14016
| ||| | ||||| ||||| ||||| | |||||||| ||||||||||| |
Sbjct 392 TGCCATGGCGCTACCTCATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCG 451
Query 14017 AGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCAT 14074
|||| || ||| ||||| || ||| ||| | ||| | ||||| | || | | |
Sbjct 452 AGATAGTCCGGACGCTGCAGCTGCTGCAGGGCCACAACAACGTGGAGTCGGTGAAGCCCT 511
Query 14075 GCCCAACCACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGT 14134
| | | ||| ||| ||| | | ||| ||||| ||| |
Sbjct 512 CCGCGGC--GAAGGAGCAGCGCTGGCTGTACCACTACGAGGTGG-----GGCAGACCATC 564
Query 14135 GGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAA 14194
|| ||| | | ||| || ||||| || | ||| |||||| || |||| |
Sbjct 565 TCTC-GCACTGCCCAGAAGAAACTGCCGCCACCCCACAGCTACCCCATGTTCACGGGCAG 623
Query 14195 CGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGC 14254
||| ||| | |||| ||||| || ||| | | |||| || || || || |||
Sbjct 624 CGCGTACAACACATTCACACGGGACTTTGTGCAGTACGTCTTCGAGAAC---CCCACGGC 680
Query 14255 CC---TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCAC 14311
| | || | | |||| | |||||| |||||||| ||||||||| | ||||||||
Sbjct 681 ACAGAAGTTCCTCGAGTGGTCCAAGGACAGCTACAGCCCTGACGAGCACGTCTGGGCCAC 740
Query 14312 CGTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCT 14370
| || | | ||| |||| |||||||| | || |||| || ||||||| | ||
Sbjct 741 CCTGAACCGCATG-CCGGGTGTGCCGGGGGGCACGCCCTTCAGCGACAAGTACCAGCTCT 799
Query 14371 CGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGA 14430
|||||||| ||| | | | ||||||||||| | | |||||||| |||| |
Sbjct 800 CGGACATGAACGCCCTTCCCCGCCTAGTCAAGTGGCAGTTCATGGAGGGGGACATCAGCA 859
Query 14431 AAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGT 14490
| || || |||||||||||| |||| |||| | |||| ||||||||| ||||
Sbjct 860 AGGGCGCGTCCTACCCGCCTTGCACCGGCCGCCACCAGCGCGCCGTCTGCATCTACGGGG 919
Query 14491 CCGGCGACGTGAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGAC 14549
||||||||| ||| || | ||| | | || || || ||||||||||||||| |
Sbjct 920 TGGGCGACGTGCCCTGGATGCTGCAGCAGCAC-CATCTCTTGGCCAACAAGTTCGACCCC 978
Query 14550 GAGACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594
||| |||||| ||||| | ||||| || ||| || |||||
Sbjct 979 GAGGTGGACGATGCGGCCGTCCAGTGTCTCGAGGAGTACCTGCGC 1023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657433208364800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |