Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq9546 268 1e-66 >seq9546 Length=11392 Score = 268 bits (296), Expect = 1e-66 Identities = 672/1005 (67%), Gaps = 26/1005 (3%) Strand=Plus/Plus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGG- 13658 |||| || || ||| |||| || ||| |||||| |||||| ||| ||| || | Sbjct 35 CGCCCGGCGAGTACCTGAATATTACGAGGGACTGCAGAGCCTTCAAGAA-GACGCGGCGC 93 Query 13659 TATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTG 13718 || ||| | || || |||| ||| |||| ||||| |||||||||||||| || || Sbjct 94 TACATCGAGTTTCCGCTCAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGGTC 153 Query 13719 ATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAAC 13778 ||||| ||||| ||||| ||||| ||||| || || || || |||||||||| |||||| Sbjct 154 ATCCATCACAAAATCGACATGTTTGAGCGGCTTCTACGGTCCGTCTACGCCCCCCAGAAC 213 Query 13779 CTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGG-GGC-GTCTCGG 13836 ||||||| ||||| ||||| ||| ||| | || ||| | || ||| || | Sbjct 214 GTCTACTGTGTCCATATGGACAGCAAATCCCCGGCCGCCTTC--CAGGAGGCTGTGAGAG 271 Query 13837 CCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACG 13896 |||| || |||||||| ||||| | ||||| ||| ||| | |||||| || | Sbjct 272 CCATTGCTGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTATG 331 Query 13897 GCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCG 13956 | ||||| || ||||||||||||| | ||||||| ||||||| ||||| Sbjct 332 CCGCCTGGTCCCGGCTGCAGGCCGACCTTAACTGCATGCAGGACCTGCTGCAGAGCCCCG 391 Query 13957 TCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGG 14016 | ||| | ||||| ||||| ||||| | |||||||| ||||||||||| | Sbjct 392 TGCCATGGCGCTACCTCATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCG 451 Query 14017 AGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCAT 14074 |||| || ||| ||||| || ||| ||| | ||| | ||||| | || | | | Sbjct 452 AGATAGTCCGGACGCTGCAGCTGCTGCAGGGCCACAACAACGTGGAGTCGGTGAAGCCCT 511 Query 14075 GCCCAACCACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGT 14134 | | | ||| ||| ||| | | ||| ||||| ||| | Sbjct 512 CCGCGGC--GAAGGAGCAGCGCTGGCTGTACCACTACGAGGTGG-----GGCAGACCATC 564 Query 14135 GGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAA 14194 || ||| | | ||| || ||||| || | ||| |||||| || |||| | Sbjct 565 TCTC-GCACTGCCCAGAAGAAACTGCCGCCACCCCACAGCTACCCCATGTTCACGGGCAG 623 Query 14195 CGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGC 14254 ||| ||| | |||| ||||| || ||| | | |||| || || || || ||| Sbjct 624 CGCGTACAACACATTCACACGGGACTTTGTGCAGTACGTCTTCGAGAAC---CCCACGGC 680 Query 14255 CC---TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCAC 14311 | | || | | |||| | |||||| |||||||| ||||||||| | |||||||| Sbjct 681 ACAGAAGTTCCTCGAGTGGTCCAAGGACAGCTACAGCCCTGACGAGCACGTCTGGGCCAC 740 Query 14312 CGTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCT 14370 | || | | ||| |||| |||||||| | || |||| || ||||||| | || Sbjct 741 CCTGAACCGCATG-CCGGGTGTGCCGGGGGGCACGCCCTTCAGCGACAAGTACCAGCTCT 799 Query 14371 CGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGA 14430 |||||||| ||| | | | ||||||||||| | | |||||||| |||| | Sbjct 800 CGGACATGAACGCCCTTCCCCGCCTAGTCAAGTGGCAGTTCATGGAGGGGGACATCAGCA 859 Query 14431 AAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGT 14490 | || || |||||||||||| |||| |||| | |||| ||||||||| |||| Sbjct 860 AGGGCGCGTCCTACCCGCCTTGCACCGGCCGCCACCAGCGCGCCGTCTGCATCTACGGGG 919 Query 14491 CCGGCGACGTGAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGAC 14549 ||||||||| ||| || | ||| | | || || || ||||||||||||||| | Sbjct 920 TGGGCGACGTGCCCTGGATGCTGCAGCAGCAC-CATCTCTTGGCCAACAAGTTCGACCCC 978 Query 14550 GAGACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 ||| |||||| ||||| | ||||| || ||| || ||||| Sbjct 979 GAGGTGGACGATGCGGCCGTCCAGTGTCTCGAGGAGTACCTGCGC 1023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657433208364800