Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq102076 129 5e-25
seq67249 87.8 1e-12
>seq102076
Length=9597
Score = 129 bits (142), Expect = 5e-25
Identities = 142/184 (77%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||| || |||| |||||||| ||||||||||||||||| || ||||| ||||||| ||
Sbjct 7667 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATC 7726
Query 30283 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341
||||| || || ||||| ||| ||| ||| |||| || || | || || || || |
Sbjct 7727 ACCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGAGACCCATTAGCAT 7785
Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30401
|||| ||||| ||||| || ||||||||||||||| ||||| || || || || || |
Sbjct 7786 CCCAAATCTTCACCCCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 7843
Query 30402 ACAG 30405
||||
Sbjct 7844 ACAG 7847
Score = 118 bits (130), Expect = 9e-22
Identities = 125/165 (76%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
||||| ||||| || || |||||||||||||| || || |||||||| || || || ||
Sbjct 4073 AGCCCCGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 4132
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || |||||||| || |||||||| ||||| || || || | || || |
Sbjct 4133 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTCAGA 4192
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106
|| || ||||| || | ||| ||||||||||| | |||||| |||
Sbjct 4193 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAGG 4237
>seq67249
Length=4427
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460
|| |||||||||||||| || | || || |||||| | | ||| | ||||| || ||
Sbjct 1853 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGGA 1794
Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
||||||||||| || |||||||||||||||| | ||||| || |||
Sbjct 1793 ATGGAGAACCACGTTTTTCTACCCATTATCAGTGCATTCTGTTTACCT 1746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405525002631660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |