Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq102076 129 5e-25 seq67249 87.8 1e-12 >seq102076 Length=9597 Score = 129 bits (142), Expect = 5e-25 Identities = 142/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| ||||||||||||||||| || ||||| ||||||| || Sbjct 7667 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATC 7726 Query 30283 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 ||||| || || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 7727 ACCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGAGACCCATTAGCAT 7785 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30401 |||| ||||| ||||| || ||||||||||||||| ||||| || || || || || | Sbjct 7786 CCCAAATCTTCACCCCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 7843 Query 30402 ACAG 30405 |||| Sbjct 7844 ACAG 7847 Score = 118 bits (130), Expect = 9e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 ||||| ||||| || || |||||||||||||| || || |||||||| || || || || Sbjct 4073 AGCCCCGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 4132 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || |||||||| ||||| || || || | || || | Sbjct 4133 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTCAGA 4192 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 || || ||||| || | ||| ||||||||||| | |||||| ||| Sbjct 4193 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAGG 4237 >seq67249 Length=4427 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || |||||||||||||| || | || || |||||| | | ||| | ||||| || || Sbjct 1853 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGGA 1794 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || |||||||||||||||| | ||||| || ||| Sbjct 1793 ATGGAGAACCACGTTTTTCTACCCATTATCAGTGCATTCTGTTTACCT 1746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405525002631660