Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq102076 136 4e-27
>seq102076
Length=9597
Score = 136 bits (150), Expect = 4e-27
Identities = 129/165 (78%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 6607 CAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGG 6666
|| |||| |||||| || ||||||||||||||||| | || || ||||| ||||| ||
Sbjct 4072 CAGCCCCGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 4131
Query 6667 CACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC 6726
||| |||| ||||||||||| || | |||||||| ||||| |||| || ||||||
Sbjct 4132 CACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTCAG 4191
Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAG 6771
|| ||||| ||||| |||| |||||||| || | ||||||||
Sbjct 4192 AACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAG 4236
Score = 136 bits (150), Expect = 4e-27
Identities = 129/165 (78%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633
|||||||| | || |||||||| |||| ||||| ||||| || |||||| || ||
Sbjct 4236 CTGATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTATGTTCTGAATGGTGAATTG 4177
Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693
|| ||||| |||||||| | || ||||||||||| |||| ||||| ||||| |||||
Sbjct 4176 TCTTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTCAATATTGCC 4117
Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTG 34738
|| || | ||||||||||||||||| || |||||| |||| ||
Sbjct 4116 AGCTATTCACTGCTCACGTACATGATTGCCCATGTCACGGGGCTG 4072
Score = 100 bits (110), Expect = 3e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || || ||||| || ||||||||||| || || || || ||||| || ||||||||
Sbjct 7677 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 7736
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
| | ||| ||| |||| ||||| || || |||||||| | ||| ||||| ||||||
Sbjct 7737 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGAGACCCATTAGCATCCCAAATCTTC 7796
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043
||||| | |||||||| ||||
Sbjct 7797 ACCCCTTTTGCAGAGAGCTCTTTGG 7821
Score = 100 bits (110), Expect = 3e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361
|||| |||||||| | ||||||||||| ||||| ||| | |||||||| || || |
Sbjct 7821 CCAAAGAGCTCTCTGCAAAAGGGGTGAAGATTTGGGATGCTAATGGGTCTCGTGAGTTCC 7762
Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421
|||| |||| ||| ||| | | |||||||| || ||||| || || || || ||||
Sbjct 7761 TGGATAAGCAGGGTTTCAGCACCAGAGAGGAGGGTGATTTGGGACCAGTGTATGGTTTCC 7702
Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446
||||||| || ||||| || || ||
Sbjct 7701 AGTGGAGGCATTTTGGAGCAGAATA 7677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447373691775600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |