Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq102076 136 4e-27 >seq102076 Length=9597 Score = 136 bits (150), Expect = 4e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 6607 CAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGG 6666 || |||| |||||| || ||||||||||||||||| | || || ||||| ||||| || Sbjct 4072 CAGCCCCGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 4131 Query 6667 CACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC 6726 ||| |||| ||||||||||| || | |||||||| ||||| |||| || |||||| Sbjct 4132 CACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTCAG 4191 Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAG 6771 || ||||| ||||| |||| |||||||| || | |||||||| Sbjct 4192 AACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAG 4236 Score = 136 bits (150), Expect = 4e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 |||||||| | || |||||||| |||| ||||| ||||| || |||||| || || Sbjct 4236 CTGATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTATGTTCTGAATGGTGAATTG 4177 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 || ||||| |||||||| | || ||||||||||| |||| ||||| ||||| ||||| Sbjct 4176 TCTTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTCAATATTGCC 4117 Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTG 34738 || || | ||||||||||||||||| || |||||| |||| || Sbjct 4116 AGCTATTCACTGCTCACGTACATGATTGCCCATGTCACGGGGCTG 4072 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || || || || ||||| || |||||||| Sbjct 7677 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 7736 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || |||||||| | ||| ||||| |||||| Sbjct 7737 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGAGACCCATTAGCATCCCAAATCTTC 7796 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 ||||| | |||||||| |||| Sbjct 7797 ACCCCTTTTGCAGAGAGCTCTTTGG 7821 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | ||||||||||| ||||| ||| | |||||||| || || | Sbjct 7821 CCAAAGAGCTCTCTGCAAAAGGGGTGAAGATTTGGGATGCTAATGGGTCTCGTGAGTTCC 7762 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| ||| ||| | | |||||||| || ||||| || || || || |||| Sbjct 7761 TGGATAAGCAGGGTTTCAGCACCAGAGAGGAGGGTGATTTGGGACCAGTGTATGGTTTCC 7702 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| || ||||| || || || Sbjct 7701 AGTGGAGGCATTTTGGAGCAGAATA 7677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447373691775600