Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq65683 163 7e-35
seq102638 98.7 2e-15
>seq65683
Length=849
Score = 163 bits (180), Expect = 7e-35
Identities = 165/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| |||||||| ||||| |||||||| || || | ||||| | || |||
Sbjct 104 AGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTACGACCGTCT 163
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| ||||| || || | || || |||||||| | |||||||||||
Sbjct 164 TCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCT 223
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || ||||| |||||||| | || |||||||| ||||| |||
Sbjct 224 TGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTC 283
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| ||||| || ||||| || || | |||||||||
Sbjct 284 TTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 318
>seq102638
Length=1501
Score = 98.7 bits (108), Expect = 2e-15
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070
|||||||||||||||||||| ||||||||| |||||||||||| | || |||||
Sbjct 1066 CCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCA 1125
Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| ||||| || || |||||||| ||||| || || | |||||| ||
Sbjct 1126 AGGGTGATGGTTTTGCCCGTGAGGGTCTTCACGAAGATCTGCATCTT 1172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1156796456430825
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |