Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq65683 105 5e-18
>seq65683
Length=849
Score = 105 bits (116), Expect = 5e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| ||||| || ||||| ||||| || || ||||| ||||| || || ||
Sbjct 318 AAAATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCC 259
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| |||||| | || || || ||||| ||||| | || || |||
Sbjct 258 AGCGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGAT 199
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||| | | || || || ||||| || |||||||||| || || | ||| |||
Sbjct 198 CAGCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGACGGTCGTACCCTGTCCGACTAC 139
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||||| || ||||| ||||| | || || || | | ||||||| |||
Sbjct 138 AACATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCGCCTGCGAGGTGGA 88
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337356227971340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |