Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq65683 152 1e-31 seq153026 89.7 1e-12 >seq65683 Length=849 Score = 152 bits (168), Expect = 1e-31 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || | ||| |||||||||||||| |||| ||||| |||| || || Sbjct 95 CGCAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTA 154 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| |||||||| |||||||| || || | || || || || || || ||| Sbjct 155 CGACCGTCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGGATGCCT 214 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| ||| ||| |||||||| || ||||| || | Sbjct 215 TCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCGAGG 274 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||||||||||| || || | ||| | |||||||| Sbjct 275 GTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 318 >seq153026 Length=858 Score = 89.7 bits (98), Expect = 1e-12 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 |||||||| | | || || ||||||||||| || |||||||| | |||||||| | Sbjct 442 TACAACGTGGTAGTCACTGCCCATGCCTTTGTAATAATTTTCTTCATAGTTATGCCTATC 501 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 ||||| || || || ||||| ||| | || || ||||||| || || || || || || Sbjct 502 ATGATCGGAGGGTTTGGAAACTGACTAGTCCCCCTAATGATCGGAGCCCCAGACATAGCA 561 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || || | | || || || || || ||| |||| || || ||||| Sbjct 562 TTCCCCCGAATGAATAACATGAGCTTCTGACTACTTCCCCCATCCTT 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190107825671870