Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq65683 152 1e-31
seq153026 89.7 1e-12
>seq65683
Length=849
Score = 152 bits (168), Expect = 1e-31
Identities = 168/224 (75%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || | ||| |||||||||||||| |||| ||||| |||| || ||
Sbjct 95 CGCAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTA 154
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || ||||| |||||||| |||||||| || || | || || || || || || |||
Sbjct 155 CGACCGTCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGGATGCCT 214
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||||||||| ||| ||| ||| |||||||| || ||||| || |
Sbjct 215 TCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCGAGG 274
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| ||||||||||||| || || | ||| | ||||||||
Sbjct 275 GTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 318
>seq153026
Length=858
Score = 89.7 bits (98), Expect = 1e-12
Identities = 120/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617
|||||||| | | || || ||||||||||| || |||||||| | |||||||| |
Sbjct 442 TACAACGTGGTAGTCACTGCCCATGCCTTTGTAATAATTTTCTTCATAGTTATGCCTATC 501
Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677
||||| || || || ||||| ||| | || || ||||||| || || || || || ||
Sbjct 502 ATGATCGGAGGGTTTGGAAACTGACTAGTCCCCCTAATGATCGGAGCCCCAGACATAGCA 561
Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724
|| || | | || || || || || ||| |||| || || |||||
Sbjct 562 TTCCCCCGAATGAATAACATGAGCTTCTGACTACTTCCCCCATCCTT 608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1190107825671870
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |