Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq102076 125 6e-24
seq67249 87.8 1e-12
>seq102076
Length=9597
Score = 125 bits (138), Expect = 6e-24
Identities = 126/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
||||| ||||| || || |||||||||||||| || || |||||||| || || || |||
Sbjct 4073 AGCCCCGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 4132
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || |||||||| || |||||||| ||||| ||||| || | || || |
Sbjct 4133 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTCAGA 4192
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877
|| || ||||| || | ||||||||||||||| | ||||| ||
Sbjct 4193 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAG 4236
Score = 107 bits (118), Expect = 2e-18
Identities = 124/162 (77%), Gaps = 4/162 (2%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075
||||||||||||||||| || ||||| ||||||| || ||||| || || ||||| |||
Sbjct 7689 AAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCTCTGGTGCT-GAA 7747
Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135
||| ||| |||| || || | || || || || ||||| ||||| ||||| || |
Sbjct 7748 ACCCTGCTTATCCAGGAACTCACGAGACCCATTAGCATCCCAAATCTTCACCCCTTTTGC 7807
Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177
||||||||||||| ||||| || || || || || |||||
Sbjct 7808 AGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 7847
>seq67249
Length=4427
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| |||||||||||||| || | || | |||||| | | ||| | ||||| || ||
Sbjct 1853 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGGA 1794
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| || |||||||||||||||| | ||||| ||||||
Sbjct 1793 ATGGAGAACCACGTTTTTCTACCCATTATCAGTGCATTCTGTTTACCT 1746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405378087169030
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |