Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq102076 87.8 7e-13 >seq102076 Length=9597 Score = 87.8 bits (96), Expect = 7e-13 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| ||| |||| |||||| | || | ||| |||||||| ||||| ||| | | || Sbjct 4233 ATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTATGTT-CTGAATGGTGAATTGTC 4175 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| | |||||| |||||| |||||| | || || || || || |||||||| Sbjct 4174 TTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTCAATATTGCCAG 4115 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 |||||| |||| ||| | ||||||| Sbjct 4114 CTATTCACTGCTCACGTACATGATTGC 4088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189737966659050