Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_031224.1
Length=59443
Score E
Sequences producing significant alignments: (Bits) Value
seq102076 87.8 7e-13
>seq102076
Length=9597
Score = 87.8 bits (96), Expect = 7e-13
Identities = 109/147 (74%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168
||||| ||| |||| |||||| | || | ||| |||||||| ||||| ||| | | ||
Sbjct 4233 ATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTATGTT-CTGAATGGTGAATTGTC 4175
Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228
||||| | |||||| |||||| |||||| | || || || || || ||||||||
Sbjct 4174 TTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTCAATATTGCCAG 4115
Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255
|||||| |||| ||| | |||||||
Sbjct 4114 CTATTCACTGCTCACGTACATGATTGC 4088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 189737966659050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |