Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq65683 120 7e-22 >seq65683 Length=849 Score = 120 bits (132), Expect = 7e-22 Identities = 157/216 (73%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || ||||| ||||||||||| |||| | || | || ||||| | Sbjct 109 CAAG-TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTACGACCGTCTTCCA 167 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || ||||| || ||||||||||| || | | ||| |||||||| ||||| | Sbjct 168 GCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGA 227 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||| ||| || || || || || || |||| Sbjct 228 TCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGC 287 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCT 152112 |||| || ||||| ||||||| ||||||||| |||| Sbjct 288 CCGTCAGGGTCTTGACGAAGATCTGCATTTTTCCCT 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151476090103955