Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq65683 140 7e-28 seq39596 93.3 9e-14 seq89012 89.7 1e-12 seq84161 89.7 1e-12 seq74966 89.7 1e-12 seq102638 84.2 5e-11 >seq65683 Length=849 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || |||| || | ||| |||||| |||||||||||||| | Sbjct 89 CCACCTCGCAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 148 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || || || || || || || |||| | || || ||| || Sbjct 149 AGGGTACGACCGTCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGG 208 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || || | || || ||||| | || || Sbjct 209 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACC 268 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||| ||||||| ||||| ||||| ||||||||||| Sbjct 269 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 318 >seq39596 Length=12926 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 8643 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 8585 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 12767 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 12825 >seq89012 Length=635 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 417 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 359 >seq84161 Length=7329 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 444 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 502 >seq74966 Length=10120 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 363 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 421 >seq102638 Length=1501 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||| |||||||||||||| || || |||||||||||||| || || ||||| || |||| Sbjct 901 CTTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGA 960 Query 282970 TCAAACGTTGTTGGTC 282985 |||| || || ||||| Sbjct 961 TCAAGCGCTGCTGGTC 976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1044612093467670