Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq44322 206 4e-48
seq84412 102 1e-16
seq124118 91.5 2e-13
>seq44322
Length=22867
Score = 206 bits (228), Expect = 4e-48
Identities = 224/297 (75%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348
|||| || | || ||||| |||||||||||| | |||| || ||| | | ||
Sbjct 1449 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 1390
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
| |||||||| |||| || || | || |||||||||||||||||||||||| | ||||
Sbjct 1389 TGTTGACGATGTCGAAGCCAACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 1330
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
|||||||| |||| |||| || || || ||||||||||| || |||| ||| | |||
Sbjct 1329 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGCGCACCCATCTCCACCATGG 1270
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
|||| ||||||||||| ||| |||||||| ||||||| | || | |||||||||||
Sbjct 1269 TCTCGCCGAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 1210
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
|| |||| ||| ||||| || || || || || || ||||| ||||||||||
Sbjct 1209 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 1153
>seq84412
Length=14514
Score = 102 bits (112), Expect = 1e-16
Identities = 187/274 (68%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336
|||| || || ||||||| | |||| ||| ||| || ||| || || || ||
Sbjct 6222 CATCCGGCACGTGGAACGCCACGTACGGGCACTTCTTCACATTGAGGCACACGAGCTTCT 6163
Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396
| | ||| |||| || ||| | || || | |||| || ||||| ||||| ||||
Sbjct 6162 CCAGGGATGCCGTCTTAACAATCTCAAAGCCAGCTGCTCCACCAAAGGTACTGGGTTTCC 6103
Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456
||||| | |||||||||||| ||| | | || || || ||||| || ||||| || |
Sbjct 6102 AGTACTCTGGGGAGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGA 6043
Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516
||| | || || || || || ||| | ||||| |||| || || | || || || |
Sbjct 6042 TCTCCACCATACTTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGTAAGCCTG 5983
Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550
||| | ||||| ||| || | |||||| || ||
Sbjct 5982 GGTAAAACTCCAGAGCATCAATGTCTCCATACAG 5949
>seq124118
Length=2984
Score = 91.5 bits (100), Expect = 2e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 9318 GTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAAGC 9377
|||||| || | |||||||| |||||||||||||| ||||| || |||||||| || |
Sbjct 2977 GTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCCGGCACCAGGCCGAACAC 2918
Query 9378 CTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGCAC 9437
||| || || || | | ||| || |||||||| | ||| || || | ||| | |
Sbjct 2917 CTCCTGCCCCACGGAGAACTGCAGGTGCTCGGGCACGTGGGGCGGGTACAGCATCTCTGC 2858
Query 9438 CTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485
||| ||| |||| || || |||||||| || || ||||||||
Sbjct 2857 CTGCGTGTCCCGCACCGTCGGCGGGTACATTTCTCCATCGATCATCTG 2810
Score = 86.0 bits (94), Expect = 9e-12
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
|||||||| || || | || ||||| || || | || || || || | |||| |
Sbjct 1176 TCACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTG 1117
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
|| ||||| |||||||| |||||||||||||| ||| |||||| |||||| |
Sbjct 1116 TAGTAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTGTAGTCACTGTTGTAAGTT 1057
Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|| |||||||||||||| | ||||| ||||
Sbjct 1056 GGTGGGCTGTCAATCAAGTGTGATCTTGCTGA 1025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 715455546939200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |