Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq44322 206 4e-48 seq84412 102 1e-16 seq124118 91.5 2e-13 >seq44322 Length=22867 Score = 206 bits (228), Expect = 4e-48 Identities = 224/297 (75%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| |||||||||||| | |||| || ||| | | || Sbjct 1449 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 1390 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||||||| |||| || || | || |||||||||||||||||||||||| | |||| Sbjct 1389 TGTTGACGATGTCGAAGCCAACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 1330 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| |||| || || || ||||||||||| || |||| ||| | ||| Sbjct 1329 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGCGCACCCATCTCCACCATGG 1270 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| ||||||||||| ||| |||||||| ||||||| | || | ||||||||||| Sbjct 1269 TCTCGCCGAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 1210 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| ||| ||||| || || || || || || ||||| |||||||||| Sbjct 1209 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 1153 >seq84412 Length=14514 Score = 102 bits (112), Expect = 1e-16 Identities = 187/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || ||||||| | |||| ||| ||| || ||| || || || || Sbjct 6222 CATCCGGCACGTGGAACGCCACGTACGGGCACTTCTTCACATTGAGGCACACGAGCTTCT 6163 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 | | ||| |||| || ||| | || || | |||| || ||||| ||||| |||| Sbjct 6162 CCAGGGATGCCGTCTTAACAATCTCAAAGCCAGCTGCTCCACCAAAGGTACTGGGTTTCC 6103 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | |||||||||||| ||| | | || || || ||||| || ||||| || | Sbjct 6102 AGTACTCTGGGGAGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGA 6043 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | || || || || || ||| | ||||| |||| || || | || || || | Sbjct 6042 TCTCCACCATACTTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGTAAGCCTG 5983 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 ||| | ||||| ||| || | |||||| || || Sbjct 5982 GGTAAAACTCCAGAGCATCAATGTCTCCATACAG 5949 >seq124118 Length=2984 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 9318 GTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAAGC 9377 |||||| || | |||||||| |||||||||||||| ||||| || |||||||| || | Sbjct 2977 GTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCCGGCACCAGGCCGAACAC 2918 Query 9378 CTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGCAC 9437 ||| || || || | | ||| || |||||||| | ||| || || | ||| | | Sbjct 2917 CTCCTGCCCCACGGAGAACTGCAGGTGCTCGGGCACGTGGGGCGGGTACAGCATCTCTGC 2858 Query 9438 CTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485 ||| ||| |||| || || |||||||| || || |||||||| Sbjct 2857 CTGCGTGTCCCGCACCGTCGGCGGGTACATTTCTCCATCGATCATCTG 2810 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || ||||| || || | || || || || | |||| | Sbjct 1176 TCACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTG 1117 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||| |||||||| |||||||||||||| ||| |||||| |||||| | Sbjct 1116 TAGTAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTGTAGTCACTGTTGTAAGTT 1057 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || |||||||||||||| | ||||| |||| Sbjct 1056 GGTGGGCTGTCAATCAAGTGTGATCTTGCTGA 1025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715455546939200