Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq65683 136 9e-27
seq102638 95.1 3e-14
>seq65683
Length=849
Score = 136 bits (150), Expect = 9e-27
Identities = 162/216 (75%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || ||||| || || || || || || || ||||||||||||||||
Sbjct 318 AAAATGC---AGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGG-- 264
Query 177975 AGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032
||| || |||||||| || || ||||| ||||| || ||||| ||||| |||||||
Sbjct 263 AGCCCAGCGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTC 204
Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092
| || ||||| | || || ||||| || || ||||| ||||| || | || || |||
Sbjct 203 CTGATCAGCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGACGGTCGTACCCTGTCCG 144
Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
| || ||| |||| |||||||| || ||||| ||||
Sbjct 143 ACTACAACATCCAGAAAGAATCCACTCTGCA-CTTG 109
>seq102638
Length=1501
Score = 95.1 bits (104), Expect = 3e-14
Identities = 84/103 (82%), Gaps = 4/103 (4%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| || |||||||| || ||||| || ||||| |||||||| |||||||| || || |
Sbjct 1166 CAGATCTTCGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTGGA--GCCCAATG 1109
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024
|||||||||||||||| ||| ||||| |||||||| |||||
Sbjct 1108 ACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGG 1066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1201285065854370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |