Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq65683 136 9e-27 seq102638 95.1 3e-14 >seq65683 Length=849 Score = 136 bits (150), Expect = 9e-27 Identities = 162/216 (75%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| || || || || || || || |||||||||||||||| Sbjct 318 AAAATGC---AGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGG-- 264 Query 177975 AGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 ||| || |||||||| || || ||||| ||||| || ||||| ||||| ||||||| Sbjct 263 AGCCCAGCGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTC 204 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || ||||| | || || ||||| || || ||||| ||||| || | || || ||| Sbjct 203 CTGATCAGCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGACGGTCGTACCCTGTCCG 144 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||| |||| |||||||| || ||||| |||| Sbjct 143 ACTACAACATCCAGAAAGAATCCACTCTGCA-CTTG 109 >seq102638 Length=1501 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/103 (82%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || ||||| || ||||| |||||||| |||||||| || || | Sbjct 1166 CAGATCTTCGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTGGA--GCCCAATG 1109 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||||||||||| ||| ||||| |||||||| ||||| Sbjct 1108 ACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGG 1066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201285065854370