Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2132 84.2 2e-11 >seq2132 Length=409716 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 |||| | || || || ||||| || ||||||||||| || ||||| ||||||||||||| Sbjct 87205 GGTCCTTGATGTAGGTGTCGATCAGCAGGCTGTACATCTCCGAGTGGATGTTCTCCATGG 87146 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 | ||||| || ||||| ||||| || || || Sbjct 87145 CGATCTGGAAGCCGTAGAAGCAGCGTGCCTC 87115 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||| || ||||| || || |||| || |||||| |||| |||| Sbjct 89871 CCTCATCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGCCCTCTCTTCT 89812 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| || || | ||| || || ||||| ||||| || ||||| || | ||| || | Sbjct 89811 TCAGCCAGAAGATGGAGGCAAAAGAGCCAGAGAAGAAGATCCCCTCCACTGCTGCGAAGG 89752 Query 17106 CGATTAATCGTTC 17118 | | | |||||| Sbjct 89751 CCACAACTCGTTC 89739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517343407872720