Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq3492 98.7 8e-16 >seq3492 Length=1229997 Score = 98.7 bits (108), Expect = 8e-16 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 18948 TGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTT 19007 |||||| | | |||||| | | |||| | |||||||| || | | || ||||| Sbjct 1206706 TGGAATTCTA--GATATCTCTCTGATGGCTTTGCCTCCATGCCATGCCCTGTGCCAGTTC 1206649 Query 19008 TACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTT 19067 || ||| | |||||||| || ||||| | |||||||| || || |||||||| || Sbjct 1206648 TATGTTCAGAGTGGTGAATTGTCTTGCCAGCTCTACCAGAGGTCTGGAGATATGGGACTG 1206589 Query 19068 GGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACA 19127 || || || ||||||||||| | ||| |||| || || ||||| | || ||||| ||| Sbjct 1206588 GGAGTGCCTTTCAACATTGCCAGCTATTCACTGCTCACATACATGATTGCCCATGTCACA 1206529 Query 19128 GGACTTAA 19135 || || || Sbjct 1206528 GGCCTGAA 1206521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399351825680430