Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq4639 131 2e-25 seq2143 87.8 2e-12 >seq4639 Length=2179793 Score = 131 bits (144), Expect = 2e-25 Identities = 194/275 (71%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | || | | |||||||||||||||||||| | |||||||||||| Sbjct 1936092 GGGCACGCCGTCGGGGCCGATGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCA 1936151 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || || |||||| ||| ||| |||| | ||| || | | ||||||| || Sbjct 1936152 GACCGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGAGAGGAGGGGTCGTCGTGCGG 1936211 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 ||||| || ||| ||||||| |||||| || || || | ||||| ||||| Sbjct 1936212 GAAAGGCAGCGCTTCTTTCAGGAAGGTGAAGAGGGGGTGAGCATTCTTCCCGTTCACCTC 1936271 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 ||||||||||| | || || || || | | | || || |||||||| || |||| ||| Sbjct 1936272 GCACTTCTCGAGCATGATGAAATTGGGTTTGTACCCCTTGCCAGGACGAACATGCTCCAG 1936331 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 || ||| |||||| | |||| || ||||||| Sbjct 1936332 CGACAGCAGGATCTCCTCGTTCTTAGCATTTTCCT 1936366 >seq2143 Length=2254643 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/138 (77%), Gaps = 10/138 (7%) Strand=Plus/Minus Query 83227 GTCGTCGCTAGGCGCCGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCC 83281 ||||||| | ||||| |||||| |||| || ||| ||| ||||| || || || | Sbjct 491099 GTCGTCGGTGGGCGCGGGCAGGTGGGCCT-TC--AGGTAGGTGAAGACGGGGTGGGTGTC 491043 Query 83282 CTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCA 83341 || || ||||| |||| |||||||| |||||| | ||||| |||||||||||| ||| Sbjct 491042 CT-GC-CCGTTCACCTGGCACTTCTGGAAGAGGGTGAAGTTGGGCTCGAAGCCGCCCCCG 490985 Query 83342 GGACGGACGTGCTTCAGG 83359 || || |||| ||||||| Sbjct 490984 GGCCGCACGTACTTCAGG 490967 Score = 86.0 bits (94), Expect = 8e-12 Identities = 114/156 (73%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || |||||||| || ||||| || || || || || | || | || Sbjct 488574 TTACCTGGTAGCCAAACTGGTTGCAGGGGAAGCCCAGGACGACGAGGCGGCGGGGG--TA 488517 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | ||||||| ||| | ||| ||||| || ||| ||| | |||||||| || | Sbjct 488516 GCGGGC-CTGCAGCATGTTGAGCTGGGTGTAGTCGCGGGTGGTGGTCCCTCAGAGCGAGG 488458 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 | |||||||||||||| | ||||||||||| |||| Sbjct 488457 CCACGTTCTCGATGAGGACCACCCGGCCCCGGAAGA 488422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608558958310160