Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq31254 147 2e-30 seq3246 132 5e-26 seq2132 125 7e-24 seq1619 86.0 6e-12 >seq31254 Length=8300616 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || || ||||| ||||||||| | || || || || Sbjct 739153 AAAATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTAGAGCCC 739212 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| || ||||||||| | ||| Sbjct 739213 AGTGACACCATAGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCCGAC 739272 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || | || |||| || ||||| |||||||| || | |||||||| |||||| Sbjct 739273 CAACAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTAC 739332 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||| ||||| || || ||||| ||||||| ||| Sbjct 739333 AACATCCAGAAGGAATCCACCCTGCAACTTGTCCTGCGCCTGAGGGGTGGC 739383 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||||||| | || || || ||| Sbjct 739384 ATGCAGATCTTTGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTAGAGCCCAGT 739443 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||||||| | ||||| Sbjct 739444 GACACCATAGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCCCCCGACCAA 739503 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 739504 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 739563 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| ||||| || || | ||| ||||||| ||| Sbjct 739564 ATCCAGAAGGAGTCCACCCTGCACCTTGTCCTTCGCCTGAGGGGTGGC 739611 >seq3246 Length=3797831 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| ||||||||| | || || || ||| Sbjct 817024 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 816965 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || ||||| ||| | || ||| Sbjct 816964 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 816905 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||||| |||||||||| Sbjct 816904 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTTTCCGACTACAAC 816845 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || || || ||||| | ||||| ||| Sbjct 816844 ATCCAGAAGGAGTCCACTCTCCACCTTGTCCTGCGCCTCAGGGGTGGC 816797 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | || || || ||| Sbjct 817252 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 817193 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| || || | ||||| || ||||| ||| | || ||| Sbjct 817192 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 817133 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 817132 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTACAAC 817073 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || || ||| |||| |||| || ||| Sbjct 817072 ATCCAGAAGGAGTCCACTCTCCACCTTGTGCTGCGTCTGAGAGGGGGC 817025 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 817483 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 817424 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | ||||| || ||||| ||| | || Sbjct 817423 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAT 817364 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| || | ||||||||| |||||| Sbjct 817363 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTAC 817304 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 817303 AACATCCAGAAGGAGTCCACTCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 817253 >seq2132 Length=409716 Score = 125 bits (138), Expect = 7e-24 Identities = 96/114 (84%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| || |||||||| || ||||| || |||||||| || |||| ||| Sbjct 86153 GAGCCGCTGCTGCGGGACAACCCCCGGCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 86212 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||||||||||||| ||||| ||||| || |||||||| | ||||||||| Sbjct 86213 ATCTGGCGCATGTACAAGAAGGCTGAGGCCTCCTTCTGGACGGCAGAGGAGGTG 86266 Score = 111 bits (122), Expect = 2e-19 Identities = 96/117 (82%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||| | ||| ||||||||||||||| ||||||| || |||||||||||||| || Sbjct 87081 GGTGGAGAGGTTCAGCCAGGAGGTGCAGGTGACCGAGGCACGCTGCTTCTACGGCTTCCA 87140 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | |||||||| ||||| | || || |||||||| ||| Sbjct 87141 GATCGCCATGGAGAACATCCACTCGGAGATGTA--CAGCCTGCTGATCGACACCTAC 87195 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 ||||||||||| || || ||||| ||||||| || ||| ||| ||| |||| || ||| Sbjct 89748 GTGGCCTTCGCAGCAGTGGAGGGGATCTTCTTCTCTGGCTCTTTTGCCTCCATCTTCTGG 89807 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 || ||||| | || || ||||| |||||||| ||| ||||||||| ||| ||| || Sbjct 89808 CTGAAGAAGAGAGGGCTGATGCCTGGCCTGACCTTCTCCAACGAGCTGATCAGCAGAGAT 89867 Query 117164 GAGG 117167 |||| Sbjct 89868 GAGG 89871 Score = 96.9 bits (106), Expect = 4e-15 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACA-CGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||| ||||| ||| | ||| |||||||| | |||| | | ||| || Sbjct 86339 AGGTGGACCTCTCCAAAGACCTCCAGC-ACTGGGAGGCCCTGAAGCCCGAGGAGAAGTAT 86397 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| ||||| |||||||| ||||| |||||||| ||||||||||||||||| ||| Sbjct 86398 TTCATCTCCCACGTCCTGGCCTTCTTCGCTGCCAGCGATGGCATCGTCAACGAGAACCTG 86457 Query 116804 GT 116805 || Sbjct 86458 GT 86459 >seq1619 Length=3721367 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/110 (78%), Gaps = 4/110 (4%) Strand=Plus/Minus Query 116810 CGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCC 116869 |||||| |||||||||||| | | ||||| | || ||||| |||||||||||| | Sbjct 1317523 CGTTTCAGCCAGGAGGTGCAGATCCCAGAGGCAAGATGTTTCTATGGCTTTCAGATCCTC 1317464 Query 116870 ATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 ||||||||||||||||| || ||||| | || ||||| ||||| ||| Sbjct 1317463 ATGGAGAACGTGCACTCAGAGATGTA--CAGCCTGCTCATAGACACCTAC 1317416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515017916739040