Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picoides_20pubescens_20[refseq_20GCF_5F000699005.1_202014-06-06] 31,254 sequences; 1,167,323,935 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3492 89.7 4e-13 >seq3492 Length=1229997 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| | || | || |||||||| |||||||| |||||||| || Sbjct 1206530 GTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATGTTGAAAGGCACTCCC 1206589 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA-TCACACACATA 97235 ||||||||||| | || || || || | ||| || || | | ||| || | ||||| Sbjct 1206590 AGTCCCATATCTCCAGACCTCTGGTAGAGCTGGCAAGACAATTCACCACTCTGA-ACATA 1206648 Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||| | || |||| || || ||||| ||||| Sbjct 1206649 GAACTGGCACAGGGCATGGCATGGAGGCAAAGCCAT 1206684 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 8/147 (5%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||||||||| |||||||| ||||| |||||||| ||||| | || || || ||| Sbjct 1209767 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 1209826 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || | |||||| ||||||| |||| || |||||||| ||||||||||| Sbjct 1209827 CTGGTGCTGAAACCCTGCTTATC----CAGGAACTCACGGGATCCATTAGCATCCCAAAT 1209882 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTT 97544 | ||| || || | |||||||| Sbjct 1209883 CTTCACTCCTTTGGCAGAGAGCTCTTT 1209909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346651907156780